Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_B20
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 30 0.33
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 29 0.77
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 28 1.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 28 1.3
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 27 3.1
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 3.1
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 5.4
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 5.4
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 9.5
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 9.5
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 519 FLDSTLTDRARSSNVREPTPEPSSDIETPSPEIQLLETPQSETS 650
FLD L + +V PT E SS + E QLLE Q+E +
Sbjct: 107 FLDQALQISPKEDDVSTPTHEASSSVFLNRHERQLLELVQNENT 150
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 28.7 bits (61), Expect = 0.77
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 32 ARTQRSVAALGRFDVRRCNCLQILL*RPSDCVLKYWIMSEKLIE 163
A T+ + +L D+ C CLQIL S +L+ W++S K IE
Sbjct: 63 AVTKLNFQSLLSLDIFEC-CLQILGIATSYTILRSWLLSRKHIE 105
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 362 ETNTVRLFYR*IRQKKMEELERQL--HEIQKRSCRYYRTSCKKISKMALGF 508
E T++ +Y ++ KK+EE+E +L ++ + T+ K+SK + F
Sbjct: 147 EEATIQRYYSLLKYKKLEEIENELLTKGVETIDFEHATTTKPKVSKQVVAF 197
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 318 EKAMVWCESPVAKYLKQIQLDYFTGE 395
E+A W +SP+AK++ LDY+ +
Sbjct: 1050 EEAFPWLKSPLAKWVVNSLLDYYASQ 1075
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 224 IKIKLWEQIGKEINETDFFHNTT 292
+ +K+ E+I K + ETDF HN +
Sbjct: 660 LPLKVAEKIKKSLRETDFCHNAS 682
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 177 YFLTNSINFSDIIQYFNTQSLGRYNKICKQ 88
YF+ + +++ Y N LGR+N+IC Q
Sbjct: 174 YFVLSLARNGELLDYIN--KLGRFNEICAQ 201
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 651 EMSLIEASLVIVSLAMEFLYLTMVPV*VLERLKIVLDLS 535
E+S + SLV ++L M L P+ +L+ + LDLS
Sbjct: 1085 ELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLS 1123
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 441 YKKEVAGTTGQAAKKFQKWPWASQLHFLDSTLTDRAR 551
++ +A T A K +QKW W + + ++ L R
Sbjct: 701 FRSMLAETNVLATKNYQKWRWDTLVQIMEGPLLSPKR 737
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 62 LTPRQSVACVRTASAGALFD 3
LTP V+C R GALFD
Sbjct: 121 LTPNPDVSCNRQVKFGALFD 140
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 268 FINLFSDLFPQFYLNCYIFIRNIL 197
F + F + FP L+CY ++++L
Sbjct: 1037 FTSYFVEKFPMLLLHCYHLVKDVL 1060
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 494 FLKFFCSLSCSTCNFFFVSHVVVSQALPFF 405
F F C+L C + FF+ H + S FF
Sbjct: 324 FFPFCCTLLCLSPKQFFLKHWISSLDAAFF 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,703
Number of Sequences: 5004
Number of extensions: 50524
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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