Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_B20
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527 31 0.80
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 30 1.4
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 29 2.4
07_01_0539 - 3985623-3986653,3986752-3987046 29 3.2
08_01_0460 + 4059640-4059810,4059904-4060038,4060157-4060240,406... 28 5.6
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 28 5.6
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 28 7.4
08_02_0217 - 14397335-14397553,14397627-14398145,14398242-143984... 27 9.8
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131... 27 9.8
03_05_1032 - 29861859-29862011,29862347-29862470,29862557-298627... 27 9.8
>11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527
Length = 1015
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 360 LKQIQLDYFTGESARKKWKSLRDNYMRYKKEVAGTTGQAAK 482
LK++ LD E +KKWK N+ R+ K TG+ +
Sbjct: 894 LKEVALDKRISEETKKKWKETVKNHPRWPKVSFVNTGEVGQ 934
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +3
Query: 291 PTVERPTRKEKAMVWCESPVAKYLKQIQLDYFTGESARKKWKSLRDNYMRYKKE-VAGTT 467
P +ER T+K +++ PV +YL Q +DY KK++++ ++ K+
Sbjct: 610 PFLERLTKKNYEVIYFTDPVDEYLMQYLMDY-----EDKKFQNVSKEGLKLGKDSKLKDL 664
Query: 468 GQAAKKFQKWPWASQLHFLDSTLTDRARSSNVREPTP 578
++ K+ W W LD+ D + SN TP
Sbjct: 665 KESFKELTDW-WKKA---LDTESVDSVKISNRLSDTP 697
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 543 RARSSNVREPTPE-PSSDIETPSPEIQLLETPQS 641
R SS+ R PTP PSS P+P + E P+S
Sbjct: 124 RVSSSSPRSPTPSPPSSSPPRPAPVVAAAEEPRS 157
>07_01_0539 - 3985623-3986653,3986752-3987046
Length = 441
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 370 ICFRYLATGDSHQTIAFSFRVGRSTVGGI 284
I R LA+GDS ++ +F VG+STV +
Sbjct: 156 IAMRRLASGDSQVSVGAAFGVGQSTVSQV 184
>08_01_0460 +
4059640-4059810,4059904-4060038,4060157-4060240,
4061068-4061097,4062183-4062227,4062352-4062417
Length = 176
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 399 ARKKWKSLRDNYMRYKKEVAGTTGQAAKKFQKWPWASQLHFLDSTL 536
AR KWK L D + +KE GQ K + A + HFL L
Sbjct: 93 ARYKWKDLFDAKTKKQKEYEEKMGQRLAKKYEAAKAGKKHFLAGCL 138
>07_03_1268 +
25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 522 LDSTLTDRARSSNVREPTPEPSSDIETPSPEIQ 620
LDST D SS + +P P S I + SP+ Q
Sbjct: 426 LDSTTADAFSSSTLNTTSPSPLSAIASSSPQKQ 458
>08_01_0004 +
39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +3
Query: 402 RKKWKSLRDNYMRYKKEVAGTTGQAAKKFQKWPWASQLHFLDSTLTDRARSSNVREPTPE 581
RK K + + R +K AG+ + P S + DSTL+ + + E T
Sbjct: 202 RKSKKKSKKHKQRCRKPTAGSEIKCKGNNCPTPAISMVDCEDSTLSPKCVGDILFEDTFS 261
Query: 582 PSSDIETPSPE 614
PSS ++ S E
Sbjct: 262 PSSSVKEASEE 272
>08_02_0217 -
14397335-14397553,14397627-14398145,14398242-14398418,
14398667-14399017
Length = 421
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 250 DLFPQFYLNCYIFIRNILRIV*AW 179
+L P F NC +F+R++ ++ AW
Sbjct: 71 ELSPSFLANCEVFVRDMQALMTAW 94
>03_06_0014 -
31012116-31012229,31012773-31012985,31013058-31013171,
31013909-31014040,31014624-31014692,31014763-31015017,
31015347-31015520,31016104-31016280,31016999-31017107,
31017343-31017506,31018221-31018517
Length = 605
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 369 IQLDYFTGESARKKWKSLRDNYMRYK--KEVAGTTGQAAK-KFQKW 497
++ D T ES +K L DN +R+K K GT + + +F KW
Sbjct: 272 VEEDALTDESGSRKKIRLEDNIVRWKIVKNADGTESRESNARFVKW 317
>03_05_1032 -
29861859-29862011,29862347-29862470,29862557-29862759,
29863081-29863199,29863489-29863623,29863695-29863950,
29864749-29864880,29865001-29865222
Length = 447
Score = 27.5 bits (58), Expect = 9.8
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Frame = +3
Query: 384 FTGESARKKWKSL-RDNYMRYKKEVAGTTGQAAKKFQKWPWAS-QLHFLDSTLTDRARS- 554
+TG+SAR+ W S+ ++N +Y E +A K +S +H L D + +
Sbjct: 229 YTGDSARRIWDSVYKENCPKYPSEEMCQEKKALYKLISGLHSSISVHIAYDYLLDESANL 288
Query: 555 -----SNVREPTPEPSSDIETPSPEIQLLETPQ 638
T P D++T S QLL P+
Sbjct: 289 AADYLEQAEYNTGNPEEDLKTQSLVKQLLYNPK 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,160,959
Number of Sequences: 37544
Number of extensions: 298497
Number of successful extensions: 1016
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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