Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_B17
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    29   0.58 
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   3.1  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   9.5  
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    25   9.5  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   9.5  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.5  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    25   9.5  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   9.5  

>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 366 VTPIKFFVKPV-TREPEIIKAILPQSHMFEWREHFW 262
           +TP  F+ K + TR P IIK+ LP+S   +W+ + W
Sbjct: 27  LTPKDFYDKFIATRTPVIIKSSLPES---DWKGYLW 59


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/86 (22%), Positives = 38/86 (44%)
 Frame = -3

Query: 556 MNRTQRSIHNEAQSSMANEQ*HMPIKPGLQMTTSAQLSRKTAQPLTIQATANA*LHNILG 377
           +N +     N+A     +++ H P  P   ++T +Q  ++  +PLTIQ   +      + 
Sbjct: 23  VNGSDSGTGNDAYKLETDDE-HPPATPVRGLSTRSQ--KRPFRPLTIQQDEDVENDTGMN 79

Query: 376 CRYSDTHQIFCQTGNQGT*NYQSNTP 299
             Y+D +     T    T   ++N+P
Sbjct: 80  TEYNDDNSSLVNTPRDSTTYAETNSP 105


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 113 FNKILELLFIKYNSLS*MCVLLILLH 36
           +N I+E+  IKYNSL+ +  LL  L+
Sbjct: 684 YNTIMEVWNIKYNSLNALARLLSALY 709


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 463 SFAAQVLLACVIVRWPLKTVLRYEWIFVFYSFI-MVAVSSAFLFLAVAIFGGNCYRRDWL 639
           SFA        + R+ L T+L   W+  FY F+  V   +    +AVAI    C  + +L
Sbjct: 53  SFAILTFFLTAVGRF-LPTILGNPWLIAFYDFVNWVFALTGGCCIAVAIRVHACDNQKYL 111


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 520 QSSMANEQ*HMPIKPGLQMTTSAQLSRKTA 431
           Q  + +E+ + P+  G ++ TSAQLSR TA
Sbjct: 18  QKEVVHEEKNQPLT-GNEVETSAQLSRDTA 46


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +1

Query: 325 FPGYRFDK--KFDGCHYIYSQE 384
           FP   FD   KF G HY YS+E
Sbjct: 73  FPYKEFDPVLKFPGIHYTYSRE 94


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 218 FSSFHLLVLTGWNHIQKCSLHSNIWDCGSIAL 313
           F S +  +  G+ HI    ++ N  DCG   L
Sbjct: 30  FDSVYAALQCGYRHIDSAQMYHNEADCGRAIL 61


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 427 AVQFFVTVALMLSFAAQVLLACVIVRWPLKTVLRYEWI-FVFYSFIMVAV 573
           ++  + T A   S +  + L   IVR  L T + Y WI F+ + F+ + +
Sbjct: 372 SLPLYKTHARRFSLSTTIHLFKKIVRITLSTFISYTWIPFLLFIFLNIFI 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,518
Number of Sequences: 5004
Number of extensions: 63581
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)