Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_B12
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.31
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 0.71
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 1.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.2
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 27 1.6
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 1.6
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 27 2.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 8.8
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 25 8.8
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.5 bits (63), Expect = 0.31
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 341 NSSVGLNGSGSRSILGPDGSCKLTTFITLIG*ADPE 234
N +VGL+ S +ILGP+G+ K T LIG P+
Sbjct: 711 NVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIPQ 746
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 0.71
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -2
Query: 165 TKVSTEFSVHRAPDTRVTAVIPP-----NVSCYGTP*TSSVSEGTNSQASVSNGSST 10
+ STE S H T +T+++PP N + P T+S++ T + S ++T
Sbjct: 50 SSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTT 106
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 156 STEFSVHRAPDTRVTAVIPPNVSCYGTP 73
S+ ++ HR+ D++ + +PPNV +P
Sbjct: 122 SSNYAHHRSADSQTKSALPPNVPASSSP 149
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 144 SVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQA 34
++H P ++ +VIPPN S G+ S + N A
Sbjct: 327 TIHYTPSSKRISVIPPNTSNIGSRVVSRSGQNNNQPA 363
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 58 YAAGLRRAVTRHVWRDHRRYACVWCSVYT 144
Y A LRR V + + H RY C +C T
Sbjct: 18 YGASLRRDVRKIEVQQHSRYQCPFCGRLT 46
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 27.1 bits (57), Expect = 1.6
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 104 ITAV--TRVSGALCT-LNSVLTFVMIMYVY*VVQFLFSTRILTTQPVPDQLSR 253
ITAV T +S T +SVLT V +++V ++ L + + T P P+ L R
Sbjct: 948 ITAVFLTIISAVASTDQSSVLTAVQLLWVNLIMDTLAALALATDPPTPEVLKR 1000
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 58 YAAGLRRAVTRHVWRDHRRYACVWC 132
Y A LRR V + + H RY C +C
Sbjct: 18 YGASLRRDVRKIEVQQHSRYQCPFC 42
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 96 NVSCYGTP*TSSVSEGTNSQASVSNGSSTXDS 1
++S P TSS S T+S S S+ SST S
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS 265
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 156 STEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSSTXDS 1
S SV + + + PP+ + TP ++S + T S S S S + S
Sbjct: 212 SATSSVSTVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTTSGSSGS 263
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 304 PYWAQTAVVSLQLSLR*SAKLIRNW 230
P WA A++ LS+ S+ L+R W
Sbjct: 828 PMWASAAMMFSSLSVLASSLLLRRW 852
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,398
Number of Sequences: 5004
Number of extensions: 31022
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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