Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_B12
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    27   6.7  
01_04_0049 - 15422996-15423407,15423954-15424114                       27   8.8  

>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 128 GALCTLNSVLTFVMIMYVY*VVQFLFSTRILTTQPVPDQLSRL 256
           GA C  NS+L  + +   + +  F     IL   PV DQL+RL
Sbjct: 133 GATCYANSILQCLYMNTSFRLGIFSLEPDILKMHPVLDQLARL 175


>01_04_0049 - 15422996-15423407,15423954-15424114
          Length = 190

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 108 VIPPNVSCYGTP*TSSVSEGTNSQASVSNGSSTXDS 1
           V+PP++S    P TSS S      AS S+ ++T  S
Sbjct: 8   VVPPSLSTLVLPHTSSASSYATVAASTSSDNTTASS 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,370,877
Number of Sequences: 37544
Number of extensions: 218064
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)