Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_B12
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   7.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.9  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 184 LSCPVSVFNKDFDNATSSGSA*PINVMKVVSLQL 285
           +SC +S+F ++FD    +     +   K + L+L
Sbjct: 67  ISCLLSIFKQEFDETERASGDLSLG-QKTIDLEL 99


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 98   GGITAVTRVSGALCTLNSVLTFVMIMYVY*VVQFLF 205
            GG+     VS  L  + + L+ V+++ V  V+ F+F
Sbjct: 983  GGVIESIMVSDYLPLVAATLSGVLVLLVIIVLAFVF 1018


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 184 LSCPVSVFNKDFDNATSSGSA*PINVMKVVSLQL 285
           +SC +S+F ++FD    +     +   K + L+L
Sbjct: 35  ISCLLSIFKQEFDETERASGDLSLG-QKTIDLEL 67


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 303 GAATATIQSNRTIMALPTXLGATXSFTAW 389
           G+ T    S+ +   +PT + AT   T W
Sbjct: 177 GSNTIERNSHESXFVVPTRVPATCCTTXW 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,319
Number of Sequences: 438
Number of extensions: 2288
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)