Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_B05
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 47 2e-06
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.6
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.6
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.6
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun... 25 7.4
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 7.4
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 25 7.4
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 9.7
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/70 (30%), Positives = 40/70 (57%)
Frame = +1
Query: 430 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQLIGKPDSI 609
Q+L +R L+ AG +IGKAG + ELR T + + + + P +R++ + G +++
Sbjct: 92 QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGV-TKAVPNVHDRVLTISGPLENV 150
Query: 610 VSGVREVLDL 639
V R ++D+
Sbjct: 151 VRAYRFIIDI 160
Score = 46.0 bits (104), Expect = 5e-06
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +1
Query: 280 KASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELD--VRML 453
KA +T +RVL+I+ E +V + I+ A+ D +R+L
Sbjct: 126 KAGVTKAVPNVHDRVLTISGPL-ENVVRAYRFIIDIFAKNSTNPDGTPSDANTPRKLRLL 184
Query: 454 IHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQLIGKPDSIVSGVREV 630
I S G +IG+ G +IK +++K R+ + PQS+ER V++ G D++ + + E+
Sbjct: 185 IAHSLMGSIIGRNGLRIKLIQDKCSCRMIASKDMLPQSTERTVEIHGTVDNLHAAIWEI 243
Score = 39.9 bits (89), Expect = 3e-04
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 472 GCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQLIG 594
GC+IG+ GSKI E+R +G+++ I ++ ER+ + G
Sbjct: 333 GCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITG 373
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 342 FSCYGEYPFGAGAIWDCYRGF 280
F CY E P G AI C + F
Sbjct: 293 FLCYSEKPNGINAIMKCMKNF 313
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 478 VIGKAGSKIKELREKTGARLKI 543
VIGK GS + LRE G ++ +
Sbjct: 744 VIGKNGSNVSSLREDLGVQINV 765
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 480 YWESWFENQRVT*ENRCAPEDIFELRAPEFGAHRSADRETGLDRVRSARGSGPR 641
YWE+ + V E+ P D+F L P HR + T L + ++ S P+
Sbjct: 73 YWEAKPVSHTVFLES---PSDVFTLEKPIASTHRWLSKLTALSKSTNSTLSTPK 123
>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 234 NRKRWQQYIKAQKPVQSLYNSPRLPRPRTGTL 329
N + +Y +KP+Q+ S RL +PRT +
Sbjct: 88 NEDKAMKYGNGKKPIQTQTLSGRLQKPRTNLM 119
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 219 GGWVDNRKRWQQYIKAQKPVQSLYNSPRLP 308
GG +D + W Q +A+ Q Y R+P
Sbjct: 292 GGCIDREEEWIQQFQARCIKQYFYGDDRMP 321
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 7.4
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = -2
Query: 333 YGEYPFGAGAIWDCYRGFVLASEL*YIAATFSDYRPSHLARYQEGDFIVCLPVP 172
YG P G GA W C A E A F R H+ R+ F CLP P
Sbjct: 55 YGSTPAG-GAEW-CSE----ALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKP 102
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 483 WESWFENQRVT*ENRCAPEDIFELRAP 563
W +W + + E CAP ELR P
Sbjct: 300 WYNWITQRVNSGEGPCAPPSYAELRGP 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,341
Number of Sequences: 5004
Number of extensions: 52915
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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