Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_B03
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    45   1e-05
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    35   0.009
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    28   1.3  
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   3.1  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    27   3.1  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   4.1  

>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = +3

Query: 417 IAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISL 569
           + G FV  AL ++C  I  HL+ Y  P  QR +VRIL ++ IY   S++S+
Sbjct: 8   LCGFFVAIALVLSCISIITHLKNYKKPVLQRSVVRILMMIVIYSSVSFLSV 58


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
 Frame = +3

Query: 279 TIYNQILRMSTTDTVNITAQRISEIVHDVLKPLQEPIFLQTRSAQV--IAGIFVFT-ALF 449
           ++Y   L+   T  ++    ++++IV  +LK     + +    AQ+  ++G F     +F
Sbjct: 592 SVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVWNTYAQLEHLSGAFTMAETIF 651

Query: 450 ITCQQIY-QHLRWYTNPSEQR-WIVRILFIVPIYGCYSWISLLFFNGD 587
            T  QI+   LR+  N +  + W  R L I    GC   I  L F GD
Sbjct: 652 KTIFQIHASQLRYIDNLNVYKNWAFRKLLINDTEGCLVIIKCLLFPGD 699


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 23/107 (21%), Positives = 48/107 (44%)
 Frame = +3

Query: 258  QKENSVITIYNQILRMSTTDTVNITAQRISEIVHDVLKPLQEPIFLQTRSAQVIAGIFVF 437
            + +N + + Y  +L +++T T+N    +       + +  ++   + +R+A +IA  F+ 
Sbjct: 1118 ETQNKMFSAY--MLTVASTSTMNGLQPKFIYF-RSIYEQYEQNTAIYSRTAFIIA-FFLV 1173

Query: 438  TALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFF 578
             A+   C        WY  PS           +P YG ++W+ L+ F
Sbjct: 1174 EAVINCCFATLFFFGWYY-PSG---FYEFNHNIPFYGGFAWLMLMIF 1216


>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 293 NSQNEYHRYGEYNR 334
           +  N Y+RYGEYNR
Sbjct: 51  SQMNHYYRYGEYNR 64


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 445 YSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSS-SMETLT 594
           Y L  N++  + V   T  +NVG  +     Q++  T GY+C S S E L+
Sbjct: 120 YELATNQWPDLMV---TLVANVGEGQPSALKQHSLQTIGYICESVSPEVLS 167


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 499 DGFVYQRKCWYICWQVMNRAVNTNIPAMTCAL-RVCRNM 386
           DG+  Q +C  I + V +R    N+P     L RVC N+
Sbjct: 76  DGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENI 114


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 459 QQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLLFFNGDSYYVY 602
           +Q Y+ L    +P E RW++ IL  V  YG      L  F+ D+  +Y
Sbjct: 190 EQFYRSL----SPLELRWLIPILLKVRKYGTSEKFILSVFHPDAARLY 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,912
Number of Sequences: 5004
Number of extensions: 57864
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)