Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_B02
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 170 2e-43
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 141 7e-35
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 82 8e-17
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 63 3e-11
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 42 1e-04
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 38 0.001
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 37 0.003
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 36 0.005
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 35 0.012
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 34 0.021
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 33 0.027
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.027
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 33 0.027
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 31 0.19
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 28 1.0
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 28 1.4
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 28 1.4
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 1.8
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 1.8
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 2.4
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 4.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.1
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 4.1
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.1
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 26 5.5
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.5
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 7.2
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 25 7.2
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 25 7.2
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 9.5
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 9.5
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 9.5
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 9.5
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 9.5
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 25 9.5
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 170 bits (413), Expect = 2e-43
Identities = 78/87 (89%), Positives = 82/87 (94%)
Frame = +2
Query: 236 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 415
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 416 ISFTVWDVGGQDKIRPLWRHYFQNTQG 496
ISFTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQG 87
Score = 98.3 bits (234), Expect = 8e-22
Identities = 46/54 (85%), Positives = 51/54 (94%)
Frame = +3
Query: 492 RGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEI 653
+G+IFVVDSNDRERI EA EEL RML+EDELRDA+LL+FANKQDLPNAMNAAEI
Sbjct: 86 QGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEI 139
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 141 bits (342), Expect = 7e-35
Identities = 64/83 (77%), Positives = 69/83 (83%)
Frame = +2
Query: 248 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 427
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 428 VWDVGGQDKIRPLWRHYFQNTQG 496
VWDVGGQDKIRPLWRHYF T+G
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKG 91
Score = 72.5 bits (170), Expect = 5e-14
Identities = 33/54 (61%), Positives = 44/54 (81%)
Frame = +3
Query: 492 RGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEI 653
+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+ ANKQDLP A++ A+I
Sbjct: 90 KGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQI 143
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 81.8 bits (193), Expect = 8e-17
Identities = 35/73 (47%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 454
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 455 IRPLWRHYFQNTQ 493
+R W++YF++T+
Sbjct: 73 LRNFWKNYFESTE 85
Score = 42.7 bits (96), Expect = 4e-05
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +3
Query: 498 LIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEI 653
+I+VVDS D R+ E R L +L E++L +L+ ANK D+ A+++ EI
Sbjct: 87 IIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEI 138
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +2
Query: 281 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 460
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 461 PLWRHYFQNTQG 496
LWR YF G
Sbjct: 79 RLWRDYFPEVNG 90
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 495 GLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEI 653
G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++ E+
Sbjct: 90 GIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDEL 142
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 287 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 451
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 452 KIRPLWRHYFQNTQG 496
+ R + Y++ G
Sbjct: 70 RFRTITTAYYRGAMG 84
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +2
Query: 290 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 454
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 455 IRPLWRHYFQNTQG 496
R + Y++ G
Sbjct: 70 FRTITSSYYRGAHG 83
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 290 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 454
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 455 IRPLWRHYF 481
+ L Y+
Sbjct: 71 LGGLRDGYY 79
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = +2
Query: 290 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 448
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 449 DKIRPL 466
+++RP+
Sbjct: 70 ERLRPM 75
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +2
Query: 290 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 454
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 455 IRPLWRHYFQNTQGS 499
R + Y++ G+
Sbjct: 72 YRAITSAYYRGAVGA 86
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +2
Query: 287 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQ 448
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 33.5 bits (73), Expect = 0.027
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +2
Query: 272 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 436
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 437 VGGQDKIRPLWRHYFQNT 490
GQ++ R L Y +++
Sbjct: 67 TAGQERFRSLIPSYIRDS 84
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.027
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +2
Query: 290 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 448
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 449 DKIRPL 466
D++RPL
Sbjct: 68 DRLRPL 73
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 33.5 bits (73), Expect = 0.027
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 404 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGSNL 505
+ K I +WD GQ+K R + R+Y++ G+ L
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVL 91
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 371 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 487
I T G + ET + +DVGGQ R W H F+N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFEN 257
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 275 GKKEMRILMVGLDAAGKTTILYKLKL 352
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 290 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 451
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 452 KIRPLWRHYFQN 487
+ + L Y++N
Sbjct: 76 RYKSLAPMYYRN 87
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +2
Query: 275 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 433
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 434 DVGGQDKIRPL 466
D GQ++ + L
Sbjct: 63 DTAGQERFQSL 73
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 290 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDK 454
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEE 73
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 563 PHELFACLADTFPIVTVY-YED*TPVYFGNNAST 465
P E+ +CL+ PI ++ Y+D P YFG+ T
Sbjct: 288 PQEILSCLSQ-IPIKFIFFYQDVRPPYFGSYTKT 320
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 272 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 436
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = -3
Query: 402 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYY 223
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 278 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 409
KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 293 ILMVGLDAAGKTTILYKLKL 352
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 281 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 382
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.2 bits (55), Expect = 4.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 534 YVPDRYCLLRRLDPCV 487
Y+ +CL+R+ DPC+
Sbjct: 288 YITQLFCLVRQFDPCI 303
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 257 LFKGLFGKKEMRILMVGLDAAGKTTI 334
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 377 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 487
T+G + + ++ ++DVGGQ R W + F+N
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFEN 215
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 472 PPQWSDFVLASNIPHSKTNVFVFY 401
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 239 GNMFANLFKGLFGKKEMRILMVG--LDAAGKTTI-LYKLKLGEIVTTIPTI 382
GN+FA L + ++ L G L+ + + + LKLGE + T+P I
Sbjct: 456 GNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDI 506
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 462 GLILSWPPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSL 340
G++++ S MFL T+ST KPIV +V + P+ ++
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTAKPIV-VVGAMRPSTAI 158
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 462 GLILSWPPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSL 340
G++++ S MFL T+ST KPIV +V + P+ ++
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTAKPIV-VVGAMRPSTAI 158
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 278 KKEMRILMVGLDAAGKTTILYKL 346
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -3
Query: 465 SGLILSWPPTSHTV-KLMFL 409
SG+ILSW P+S + K++FL
Sbjct: 128 SGIILSWSPSSFLLGKIVFL 147
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 510 VDSNDRERIGEAREELMRMLSEDE 581
+DS++ E I +A+ E+ LSE+E
Sbjct: 430 IDSDEEETIDDAKSEMFVDLSEEE 453
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 278 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 385
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 359 IVTTIPTIGFNVETVEYKNISFTVW 433
I T P F+++ EY N+ VW
Sbjct: 237 IYFTFPVNSFSIDGCEYNNVKALVW 261
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +2
Query: 287 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 451
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 452 KIRPLWRHYFQ 484
+ + L +++
Sbjct: 69 RFQSLGMAFYR 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,585
Number of Sequences: 5004
Number of extensions: 58920
Number of successful extensions: 210
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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