Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_A22
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    28   1.3  
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    28   1.3  
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   9.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.5  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/22 (54%), Positives = 19/22 (86%), Gaps = 2/22 (9%)
 Frame = -1

Query: 307 LLERIGIKAKQPNS--KKSVRI 248
           ++E+IG++AKQPNS  +K VR+
Sbjct: 51  VVEKIGVEAKQPNSAIRKCVRV 72


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/22 (54%), Positives = 19/22 (86%), Gaps = 2/22 (9%)
 Frame = -1

Query: 307 LLERIGIKAKQPNS--KKSVRI 248
           ++E+IG++AKQPNS  +K VR+
Sbjct: 51  VVEKIGVEAKQPNSAIRKCVRV 72


>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 158

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +2

Query: 17 PPP---KPLDRTNPGSRCIKKKSASET 88
          PPP   KP ++TN  +   +K S+SET
Sbjct: 13 PPPIINKPFEQTNSSASLTQKNSSSET 39


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 390 RQQSLPARRIRSKPQRLLRVQRRATEPTQRRHKNIRGRQFRIVEFST 530
           R  S+P    + +PQ      R +T PTQR  + +R  +  I  F T
Sbjct: 273 RSPSIPNDVEQPQPQSSRSRPRSSTIPTQRTLERLRENRSSIFSFRT 319


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 117  HRTNTGTISTVSLALFFLMQRDPGFVRSSGFGGGA 13
            H T TGT   + L +  L+    GF  S  FGG A
Sbjct: 1665 HDTKTGTNPILRLVIISLIPIAAGFGMSGFFGGMA 1699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,617
Number of Sequences: 5004
Number of extensions: 42801
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)