Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_A22
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.9  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   5.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 316  YPSLLERIGIKAKQPNSKKSVRITTLALTAVGFTAVSHVRVKLM 185
            Y    ER G+   +     + R+T   LTA+G T V H + K+M
Sbjct: 939  YAESFERSGVTTLEA----AARVTVQELTALGVTLVGHQK-KIM 977


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 568 DMNGTNPYDEYFVPVNEHRKL 630
           DMNGT P DE  + V+ + K+
Sbjct: 254 DMNGTTPLDEKPLDVSSNDKV 274


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 391 DNKVFQHDESDPNHNDSFASNGAQQNQLNGD 483
           +N    ++ ++   ND+   NGA  N  NGD
Sbjct: 241 NNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 189 LWLHVKLSHFTSISHGLHR 133
           +WL   L  F  IS GLHR
Sbjct: 149 VWLLAGLISFVPISLGLHR 167


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = -1

Query: 394 CRSRVGRXXXXXXXXXXXXATPICCGYPSLLERIGIKAKQP 272
           C + VGR              P+    P++L RIGI    P
Sbjct: 352 CVNYVGRKRPMHNVVYRPGENPVTQRLPAVLSRIGIILASP 392


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 483 HKNIRGRQFRIVEFSTEEW 539
           H  +RG QF  + F   +W
Sbjct: 35  HNILRGMQFTDITFGVNKW 53


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 205 HVRVKLMVACKTVTFYVHKPWVA 137
           ++R  L V     T Y+H+PW A
Sbjct: 445 YIRRYLPVLKNFPTRYIHEPWNA 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,958
Number of Sequences: 438
Number of extensions: 2856
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)