Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_A21
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   1.3  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    27   1.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.3  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    26   5.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.4  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   7.2  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   9.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.5  

>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 607 LLNTAMSSLKDSEEHTSPPATPGSRGVQVASSHFSKIRASRGK 479
           L+NT +  LK  EE+ +PP  P       +  HF K+ A   K
Sbjct: 150 LVNT-IEKLKVKEENEAPPVIPAKPFSSSSEQHFRKVPALPSK 191


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -3

Query: 607 LLNTAMSSLKDSE----EHTSPPATPGSRGVQVASSHFSKIRASRGKQGMPVNSVFVSLV 440
           +LNT  +  K++E    ++ S P T  S    + SS  S++  +R   G  V ++  SL+
Sbjct: 322 VLNTLYAVTKNAEGWSKQYGSSPVTVDSAAANIVSSGISRVILTRVGNGPRVLTIDESLI 381

Query: 439 D 437
           D
Sbjct: 382 D 382


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 249 EPYTRARAELSWLSLGTTRASTAEVTWRGERCTTS 353
           EPY + ++++S +++ T  ASTA++  R +   T+
Sbjct: 389 EPYLKDQSKISEIAVKTAMASTADILSRSKGSATA 423


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 543 GVAGGDVCSSESFNEDIAVFSKQIRQE 623
           G+ GG+  ++ S  +  ++F KQIRQE
Sbjct: 2   GIFGGNSGNAPSSEDKKSIFMKQIRQE 28


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 118 RVHYDTSELAGRCDSVRSYMCMCARACVVS*VGPVTEI 231
           ++   TS      D+V+ Y+C+     VVS V PV EI
Sbjct: 431 KIRSPTSTPTPLIDAVKQYICLALAKNVVSHVLPVFEI 468


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 241 HHERFRSRAQPKTPHKHVHTYTYMIGHCHSGPLA 140
           HH   R    P  PH H H   Y   +C   P++
Sbjct: 169 HHPHTRPPHHP--PHPHFHNNNYPPPYCFQSPVS 200


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 586 SLKDSEEHTSPPATPGSRG 530
           SL+DS++H S P +P S G
Sbjct: 317 SLRDSQKHNSHPNSPFSSG 335


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 9   PARLPSAPGLPLHRASLGHAASRTSDKHPPR 101
           P  +PS P LP +    GH   + S  + P+
Sbjct: 534 PEEIPSVPPLPSNFKDKGHVPQQRSVSYTPK 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,474
Number of Sequences: 5004
Number of extensions: 56600
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)