Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_A10
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 31 0.60
02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270... 30 1.8
04_01_0539 - 6986728-6986996,6987807-6988284,6988580-6988594,699... 29 2.4
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675... 29 2.4
08_02_0179 - 13904027-13904125,13904177-13904259,13906019-139060... 29 3.2
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 29 3.2
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 29 4.2
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 28 5.6
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 27 9.8
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252... 27 9.8
>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 31.5 bits (68), Expect = 0.60
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Frame = +2
Query: 2 PTALNDSPTLYF-NFQLISRLEEVKQKIN--KVIQLADI---CRKYENVGD-------NI 142
P+++ D LYF N ++LEE+ + IN K +Q DI C + G +
Sbjct: 677 PSSVTDLVELYFLNLSGCAKLEELPESINNLKCLQHLDISGCCALQKLPGKFGSLAKLSF 736
Query: 143 VFYDSENDV----DSLDYEHLNRAMIDECKEYDKMDKFLLKLNRAKVQTMCLKTEKGKLS 310
V S + + DSL+ E L ++ +C E +++ + L L R +V M L
Sbjct: 737 VNLSSCSKLTKLPDSLNLESLEHLILSDCHELEQLPEDLGNLYRLEVLDMSDCYRVQVLP 796
Query: 311 KENIQLKHYIKKYL 352
K QLKH KYL
Sbjct: 797 KTFCQLKHL--KYL 808
>02_05_0287 -
27525722-27525812,27525927-27526057,27526945-27527022,
27527080-27527186,27527302-27527380,27528001-27528096,
27528192-27528443,27528691-27528840,27528953-27529277,
27529373-27529584
Length = 506
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -1
Query: 223 FFAFVNHCSIQMFIVKRIHIILGVIKNNVIADVFVFTANISQLNYFIY 80
FFA C I F+ +R++ + K +V+ V TA+ ++NY+++
Sbjct: 52 FFAPNTTCDISPFVKERLNRYGSIFKTSVVGRPVVVTAD-PEMNYYVF 98
>04_01_0539 -
6986728-6986996,6987807-6988284,6988580-6988594,
6990029-6990043,6990279-6990875
Length = 457
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 20 SPTLYFNFQLISRLEEVKQKINKVIQLADICRKYENVGD-NIVFYDSENDVDSLDYEHL 193
+P LY + IS + K NK ++ R++E++ D + VF +S ND++ ++ EH+
Sbjct: 187 APELYPKYLDISIMPCNKMPCNKRGEILTSIRQFEDLLDADDVFVNSFNDLEPIEAEHM 245
>01_06_0968 +
33466574-33466607,33467087-33467115,33467438-33467595,
33468319-33468436,33468520-33468708,33469008-33469343,
33469468-33469569,33469696-33469890,33469993-33470155,
33470314-33470579,33470670-33470765,33470860-33471255,
33471403-33471501
Length = 726
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 239 KFLLKLNRAKVQTMCLKTEKGKLSKEN 319
KF + R +V+TMC K E KLS EN
Sbjct: 102 KFWFQNKRTQVKTMCWKEENYKLSVEN 128
>08_02_0179 -
13904027-13904125,13904177-13904259,13906019-13906066,
13906215-13906308,13907114-13907184,13910157-13910343,
13910714-13910717,13910847-13910919,13911044-13911088,
13912046-13912442
Length = 366
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Frame = +2
Query: 146 FYDSENDVDSLDYEHLN--RAMIDECKEYDKMDKFLLKLNRAK-VQTMCLKTEKGKLSKE 316
++D+ DVDSLD E LN ++D ++ + K + L+ K +Q + +T L+ +
Sbjct: 116 YFDAGFDVDSLDLEVLNGLALLVDVPRDDNITAKMMESLHIPKGIQRVLFRT----LNTD 171
Query: 317 NIQLKHYIKKYLTELALRE-KDRPHSVKIAS 406
++ +I Y L++ E + PH VK++S
Sbjct: 172 SMSTDSFI-AYSYNLSIMEFPEIPHLVKLSS 201
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 143 VFYDSENDVDSLDYEHLNRAMIDECKEYDKMDKFLLK 253
VF D D+D Y LN ++DE + +K+ +FL K
Sbjct: 247 VFRDILMDLDKQSYNDLNLKLLDERQLINKLQEFLQK 283
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/89 (20%), Positives = 38/89 (42%)
Frame = +2
Query: 77 KINKVIQLADICRKYENVGDNIVFYDSENDVDSLDYEHLNRAMIDECKEYDKMDKFLLKL 256
K N + L + +K + + + F+ S EH + + EY++ F +KL
Sbjct: 259 KENTLDDLIALLKKGKMEDNLLEFFPSAKRTSEALSEHFTKEGLTSLVEYNEKKMFEVKL 318
Query: 257 NRAKVQTMCLKTEKGKLSKENIQLKHYIK 343
K+ + E+ ++S+ +K +K
Sbjct: 319 KEIKLTLTTMINEEAEISEVTEAVKQQVK 347
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 28.3 bits (60), Expect = 5.6
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 9/129 (6%)
Frame = +2
Query: 185 EHLNRAMIDE-----CKEYDK----MDKFLLKLNRAKVQTMCLKTEKGKLSKENIQLKHY 337
+HL R + +E KE DK +D +LNR + + KL E +LK
Sbjct: 236 DHLVRNLAEEKASWRSKENDKVRNILDAVKEELNRERKNRQRAEIMNSKLVSELSELKSA 295
Query: 338 IKKYLTELALREKDRPHSVKIASGVQKLDANGKTLNRPVTCIEGALCNAVMHEKRMKTYV 517
K+YL + K R ++ + K A K + + + V EK+M
Sbjct: 296 AKRYLQDYEKERKARELMEEVCDELAKEIAEDKAEVEALKSESMKMRDEVEEEKKMLQMA 355
Query: 518 KKNKEANIQ 544
+ +E +Q
Sbjct: 356 EVWREERVQ 364
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 233 MDKFLLKLNRAKVQTMCLKTEKGKLSKENIQLKHYIKKYLTELALREK 376
++K +L + K++ LK + +LSK+N +L K+ + ALR+K
Sbjct: 258 INKQILGAEQYKMENRDLKRQNKELSKQNKELMEQSKELMELPALRKK 305
>01_06_1763 +
39723596-39723691,39724030-39724672,39724773-39725275,
39725786-39725905,39726356-39726421,39727146-39727256,
39727650-39727726,39727996-39728063,39728384-39728497,
39728593-39728774,39728926-39728994,39729294-39729449,
39729657-39729734
Length = 760
Score = 27.5 bits (58), Expect = 9.8
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +2
Query: 167 VDSLDYEHLNRAMIDECKEYDKMDKFLL-KLNRAKVQTMCLKTEKGKLSKENIQLKHYIK 343
++S+ E+ N + EC D+ K L ++ + + + L++ + KL KE L I
Sbjct: 479 LESVRTEYANAQL--ECNAADERAKVLAAEVILLEDKALRLRSSELKLEKEIEGLSSEIS 536
Query: 344 KYLTELALREKDRPHSVKIASGVQKLDANGKTLN 445
Y +++ EK+R H + S V+ L K L+
Sbjct: 537 SYRRKVSSLEKERQH---LQSTVEALQEEKKLLH 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,129
Number of Sequences: 37544
Number of extensions: 288051
Number of successful extensions: 787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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