Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_A05
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 90 2e-19
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 84 1e-17
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 33 0.029
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.5
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 1.9
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 26 3.4
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 26 3.4
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 4.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 4.5
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 5.9
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 5.9
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 7.8
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 90.2 bits (214), Expect = 2e-19
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 267 PGKCTRGWESNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 440
P K T+ + +I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R
Sbjct: 50 PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSA 109
Query: 441 LRFNTRVRFEERYKSGKNKWFFQKLRF 521
R + FEE+Y+SGK+ WFF LRF
Sbjct: 110 ARKTVKKTFEEKYQSGKSAWFFTPLRF 136
Score = 76.6 bits (180), Expect = 2e-15
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = +2
Query: 119 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMG 292
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 84.2 bits (199), Expect = 1e-17
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +3
Query: 267 PGKCTRGWESNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 440
P K T+ + +I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R
Sbjct: 50 PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSA 109
Query: 441 LRFNTRVRFEERYKSGKNKWFFQKLRF 521
+ + FEE+Y++GK+ WFF LRF
Sbjct: 110 AKKTVKNTFEEKYQTGKSAWFFTPLRF 136
Score = 80.2 bits (189), Expect = 2e-16
Identities = 33/58 (56%), Positives = 45/58 (77%)
Frame = +2
Query: 119 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMG 292
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 33.1 bits (72), Expect = 0.029
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 98 KRTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 211
K P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 41 KAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 125 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 208
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 407 CAEFFKAEVNCITCWHQVIIVYNLHERLYLGPLVDFIRFPSSCALSGGTCRY 252
CA+F E N + WH YNL R Y + D + L G C Y
Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNVSDLPQTRLCYGACVY 820
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 303 IHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 425
I R K P K+VNYNH + + +F K D+ DP
Sbjct: 32 IFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -1
Query: 378 LYNVLASSDYSLQPSRKALSWTSCGFYSIPILLCTFRGYL 259
LY L+ S + P R W SC FY I L YL
Sbjct: 246 LYRGLSVSMLKVAPGRYECLWLSCHFYYSIIYLLNSMFYL 285
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 225 LSEVPSS*FLTTIALRPAYRPLKTSTTLPG 136
L E+P + F T+ AY P S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 422 VFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLY 321
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 307 WILFDSHPLVHFPGVPVDTSDE 242
WI ++ PLV P +D SDE
Sbjct: 320 WIALEALPLVSIPNESLDESDE 341
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 384 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 518
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 378 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 494
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 378 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 476
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,603
Number of Sequences: 5004
Number of extensions: 49990
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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