Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_A05
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 104 4e-23
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 104 4e-23
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 31 0.44
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 1.8
AC024763-2|AAK68885.2| 411|Caenorhabditis elegans Hypothetical ... 29 1.8
AC024763-1|AAK68886.1| 411|Caenorhabditis elegans Hypothetical ... 29 1.8
U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory recep... 28 5.4
AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative chem... 28 5.4
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 27 7.2
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF000265-10|AAB52949.2| 335|Caenorhabditis elegans Hypothetical... 27 7.2
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 9.5
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 9.5
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 9.5
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 104 bits (250), Expect = 4e-23
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Frame = +3
Query: 267 PGKCTRGWESNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 440
P K T+ KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 441 LRFNTRVRFEERYKSGKNKWFFQKLRF 521
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/58 (75%), Positives = 48/58 (82%)
Frame = +2
Query: 119 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMG 292
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MG
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMG 58
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 104 bits (250), Expect = 4e-23
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Frame = +3
Query: 267 PGKCTRGWESNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 440
P K T+ KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 441 LRFNTRVRFEERYKSGKNKWFFQKLRF 521
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/58 (75%), Positives = 48/58 (82%)
Frame = +2
Query: 119 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMG 292
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MG
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMG 58
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 65 KIHKIGLKIN*KRTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVK 199
K+ + G K + + K + PG V++VL+GR+ G++ + +K
Sbjct: 49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLK 93
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 149 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGIE*NPQEVQDKA 328
++ ++G +G KA+ Y + D PYG + + G+ Y H ++ +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY-MAAH----VDNSPAQVQSIT 230
Query: 329 FREGCKL 349
R+G L
Sbjct: 231 IRQGNSL 237
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 149 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGIE*NPQEVQDKA 328
++ ++G +G KA+ Y + D PYG + + G+ Y H ++ +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY-MAAH----VDNSPAQVQSIT 230
Query: 329 FREGCKL 349
R+G L
Sbjct: 231 IRQGNSL 237
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 149 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGIE*NPQEVQDKA 328
++ ++G +G KA+ Y + D PYG + + G+ Y H ++ +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY-MAAH----VDNSPAQVQSIT 230
Query: 329 FREGCKL 349
R+G L
Sbjct: 231 IRQGNSL 237
>AC024763-2|AAK68885.2| 411|Caenorhabditis elegans Hypothetical
protein Y39A3CL.4a protein.
Length = 411
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 310 LWILFDSHPLVHFPGVPVDTSDES 239
+W L S P V+FP P +TS ES
Sbjct: 193 MWYLQSSLPAVYFPAKPTETSGES 216
>AC024763-1|AAK68886.1| 411|Caenorhabditis elegans Hypothetical
protein Y39A3CL.4b protein.
Length = 411
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 310 LWILFDSHPLVHFPGVPVDTSDES 239
+W L S P V+FP P +TS ES
Sbjct: 193 MWYLQSSLPAVYFPAKPTETSGES 216
>U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory receptor
family protein 2 protein.
Length = 439
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 35 FCILLYT*SRKIHKIGLKIN*KRTN 109
FC+LL+T RK +++G++ N R N
Sbjct: 80 FCLLLFTTLRKFNQVGVRPNGTREN 104
>AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative
chemoreceptor GUR-2 protein.
Length = 427
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 35 FCILLYT*SRKIHKIGLKIN*KRTN 109
FC+LL+T RK +++G++ N R N
Sbjct: 68 FCLLLFTTLRKFNQVGVRPNGTREN 92
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 185 PCDPRTGHLRPALLYPASLSYPS 117
P D TGH RPAL P PS
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS 572
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 162 VAGTRVARLS*SRITTKVPPTSRTGMLSSLVSTGTPGKCTRGWESNKIHKRS 317
VAG R +RLS S T + T S S TP + T +SN I +++
Sbjct: 520 VAGCRKSRLSHSSTRTADTIAASTSTPPSTTSNITPSRPTTSEQSNTIKRKT 571
>AF000265-10|AAB52949.2| 335|Caenorhabditis elegans Hypothetical
protein C18E3.1 protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 231 TGMLSSLVSTGTPGKCTRGWESNKIHKRSKIKPFVKVVNY 350
TG + LVS TP C R +N +H + F ++Y
Sbjct: 124 TGHSALLVSLNTPTYCVRYLAANAVHTPKNVLIFASPLSY 163
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 107 NPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 208
N ++ K K G V+SGRY G ++V+ D
Sbjct: 465 NAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 107 NPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 208
N ++ K K G V+SGRY G ++V+ D
Sbjct: 465 NAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 297 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 398
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 297 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 398
NK KR KI K YNHL+P T+D+S K
Sbjct: 400 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 297 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 398
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,529
Number of Sequences: 27780
Number of extensions: 268917
Number of successful extensions: 806
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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