Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_A03
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0218 - 2351191-2351319,2351782-2351985                           30   1.9  
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381...    27   9.9  
10_08_0050 + 14469879-14470072,14470620-14471094                       27   9.9  
06_03_0854 + 25400855-25403741,25406174-25407708                       27   9.9  
06_03_0101 + 16659185-16660546                                         27   9.9  
05_01_0169 - 1170614-1172098                                           27   9.9  

>10_01_0218 - 2351191-2351319,2351782-2351985
          Length = 110

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -2

Query: 376 GEHVS--YAVRQRRPWSW*PRLTKPRCPLST 290
           GE V   Y    R PW W PRL  P  P +T
Sbjct: 6   GESVGSGYGRIHRMPWQWLPRLDPPNAPTAT 36


>12_01_1073 +
           11135853-11137388,11137627-11137846,11137990-11138178,
           11138257-11138457,11138547-11139246,11163479-11164106
          Length = 1157

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 207 TSFLSLYISXNKKLLAATAAGNGIGIDTVDSGHRGFV 317
           T+ LS Y S +  ++  TA+ NG+ +D   S H   +
Sbjct: 31  TNSLSKYASPSDNMIWETASSNGVAMDLGRSAHHQLI 67


>10_08_0050 + 14469879-14470072,14470620-14471094
          Length = 222

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 7   ERANVKCGSREFNSNRKHVGNTS---K*SKRENQGISGDTNSNKMLFLFPA 150
           E A++ CG    +S+R + GN+S   +  +REN GI  +    ++    PA
Sbjct: 94  EGADLACGFTSTSSDRSNSGNSSEMLRFCRRENLGIGSELGGGELENAGPA 144


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 325 PRLTKPRCPLSTVSIPMPFPAAVAA 251
           P +  P   L  + IPMP PAA AA
Sbjct: 658 PAVAPPAAALEAILIPMPPPAAAAA 682


>06_03_0101 + 16659185-16660546
          Length = 453

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 283 IPMPFPAAVAARSFLLXEMYSDKNDVTX*SQDQIRVCKSDETSP 152
           IP+PFPA    R++L    Y  ++     S+D I+  + + T P
Sbjct: 243 IPLPFPARANWRAYLNRCPYYSRDITVSESRDTIKYVEMELTRP 286


>05_01_0169 - 1170614-1172098
          Length = 494

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 362 LCSATTKTVVMVTSINKATVSTINRINSDAISCCCCCE 249
           L   +   +  +T+   A +  + R  +  +SCCCCC+
Sbjct: 160 LAGQSAHAMPALTASVDAALGEVARRVAAGLSCCCCCD 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,840,525
Number of Sequences: 37544
Number of extensions: 286021
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)