Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_P24
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_11498| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_52486| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_38467| Best HMM Match : RVT_1 (HMM E-Value=4.2e-05) 28 7.7
SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0) 28 7.7
SB_6057| Best HMM Match : ig (HMM E-Value=7.3e-06) 28 7.7
>SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/66 (36%), Positives = 43/66 (65%)
Frame = +2
Query: 413 NAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKT 592
++G +V+V VE VF A++P+P + Q + V + GN YT++ Y + Q T++ L++
Sbjct: 83 SSGGSVDVSVEEVFAHAMKPFPAKVAQSDKHQVLFTGNHYTFAVYKSKQQSTTITLSSSN 142
Query: 593 VESFTK 610
+ES+TK
Sbjct: 143 IESYTK 148
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +2
Query: 146 ISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKDS 325
I+ D+ L R +D+S+QLVKV + I L+N G V F FAV+ + +NLA + A
Sbjct: 26 INHDLVLSKASRKIDLSSQLVKVSTSITLDNGGNQPVDSFHFAVDPSVADNLALLSASSG 85
Query: 326 NSKDLRLAE 352
S D+ + E
Sbjct: 86 GSVDVSVEE 94
>SB_11498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 230 LENSGKSSVKHFLFAVEEAAKNNLAFIGAKDSNSKDLRLAETTVKGY---DYVKFWRVEL 400
LEN G VKH AK L AKD N K L + ++G + ++ +R EL
Sbjct: 8 LENLGAKPVKHVTSQKHLRAKAILEKDKAKDQNIKTLLSKHSNIQGSTLPEEMRLYRYEL 67
Query: 401 KE-PLNAG 421
E L AG
Sbjct: 68 VEIMLKAG 75
>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +1
Query: 355 HCERL*LC*ILACGAQGTPKRRCHSKCCCRN---CVHQ--SFTTI-SDSYNSARRPVCEI 516
HC C +C G + C +KC C+N CV++ FT I S +N +CE
Sbjct: 104 HCVDAYKCFRCSCDGTGYYGQTCQNKCPCKNGGHCVNKVDGFTCICSPGFNG---KLCEN 160
Query: 517 CW 522
W
Sbjct: 161 IW 162
>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +1
Query: 355 HCERL*LC*ILACGAQGTPKRRCHSKCCCRN---CVHQ--SFTTI-SDSYNSARRPVCEI 516
HC C +C G + C +KC C+N CV++ FT I S +N +CE
Sbjct: 104 HCVDAYKCFRCSCDGTGYYGQTCQNKCPCKNGGHCVNKVDGFTCICSPGFNG---KLCEN 160
Query: 517 CW 522
W
Sbjct: 161 IW 162
>SB_52486| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 213 TFTSWVDISTVRSTFFNFISLDIVSTLALRVCIVRNNTKKSV 88
T T W+DISTV + +I L +T +V NT+K V
Sbjct: 28 TRTHWMDISTVVTKQPVYIPLPAKATTKYEYSLVNFNTRKHV 69
>SB_38467| Best HMM Match : RVT_1 (HMM E-Value=4.2e-05)
Length = 400
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 478 DSYNSARRPVCEICWQFVYILPVLYLHTKNQRNSKYKDC 594
DS +AR P C+I Q+VY + V LH + N K+C
Sbjct: 318 DSNLNARLPACDITSQYVYRMAV-SLHVTSSHN-MCKEC 354
>SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 546 YGEYVYKLPTYFTNWSSC 493
YGE++ LPTY+T S+C
Sbjct: 225 YGEHMQPLPTYYTMESTC 242
>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
Length = 875
Score = 27.9 bits (59), Expect = 7.7
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 1/130 (0%)
Frame = +2
Query: 176 DRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKDSNSKDLRLAET 355
+R + T L +VS+ + K K + A+E KN+ F S LR E
Sbjct: 356 ERLYMVRTMLESIVSEKGAKKMRKDLDKEHIDAIETFLKNSFFF-------SDLLRFGEV 408
Query: 356 TVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE-DQFVKYVGNLY 532
+ D + W E L GA + +E L + + ++V Y +LY
Sbjct: 409 LRECCDLSQLWFREFYLELTMGARIQFPIEMSLPWILTNHILESKEPSMMEYVLYPLDLY 468
Query: 533 TYSPYYTSTQ 562
S +Y T+
Sbjct: 469 NDSAHYALTE 478
>SB_6057| Best HMM Match : ig (HMM E-Value=7.3e-06)
Length = 814
Score = 27.9 bits (59), Expect = 7.7
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Frame = +2
Query: 323 SNSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVE---TVFTKALQPYPTAITQ 493
+ S + + T+ GY + + R L LNA ++ +E TV + P P ++
Sbjct: 325 NTSTTVAIGNCTLSGYTFTRHPRFNLDLELNATGAESIGLEYNTTVGVSTILPSPYSL-- 382
Query: 494 QEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKGEAFLTS 631
+ FV +LYT + T + I ++ FT L S
Sbjct: 383 ETTDFVSITPHLYTSA---TKLPTDATIASSTFAAIFTPSPTILAS 425
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,970,721
Number of Sequences: 59808
Number of extensions: 429269
Number of successful extensions: 1110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -