Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_P16
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    28   1.3  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   9.4  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   9.4  

>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 202 HYHGSNIILFEENTVAYRKASFAHGLTFSEKPLLPGEIFLVE 327
           HYH   I   EEN  AYR A++A       K L  G++  V+
Sbjct: 117 HYHPGEINFDEENWEAYRAANYAFAEAI-VKNLQDGDLIWVQ 157


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 215 RILYCSKKIQLPTEKLVLHTA*LLVK 292
           ++L+CS  + L + + VLHTA + +K
Sbjct: 527 QLLFCSNPVVLDSMRHVLHTANVQIK 552


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 415 LCHPEPLLVAQEVLTRAAYDHSILFRFFQFLLEIFHQVEG--VFH*KSS 275
           LC+  P  ++  +  +A   + +LFR+F  L  +  Q+E   V H K+S
Sbjct: 568 LCYKVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNS 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,838
Number of Sequences: 5004
Number of extensions: 55725
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)