Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_P13
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    31   0.54 
AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    31   0.71 
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      28   5.0  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.0  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.0  
AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   8.7  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +1

Query: 484 RKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRR 621
           RK + +++++  A R+R K+ K+   R KKR+ R + +A+  + RR
Sbjct: 860 RKAKKRKRDEEEAERLREKVRKREERREKKRR-RAIRRAEREKQRR 904


>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 324 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN--SSGLAS 199
           N+  +RTC   P+  TA+ S TAS S   STC ++N  SS L S
Sbjct: 87  NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNADSSSLCS 127


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 131 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 253
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical
           protein F53H1.4b protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +1

Query: 469 MILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAW 648
           +ILSSR+++ K+KE+    + +++  +K     K++K     K    +  ++   E+ A 
Sbjct: 193 VILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEEKAA 252

Query: 649 R 651
           R
Sbjct: 253 R 253


>AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical
           protein F53H1.4c protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +1

Query: 469 MILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAW 648
           +ILSSR+++ K+KE+    + +++  +K     K++K     K    +  ++   E+ A 
Sbjct: 229 VILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEEKAA 288

Query: 649 R 651
           R
Sbjct: 289 R 289


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +1

Query: 469 MILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAW 648
           +ILSSR+++ K+KE+    + +++  +K     K++K     K    +  ++   E+ A 
Sbjct: 229 VILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEEKAA 288

Query: 649 R 651
           R
Sbjct: 289 R 289


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 627 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 538
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 627 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 538
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 627 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 538
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 627 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 538
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 627 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 538
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical
           protein W03F8.2 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 624 HSSWAMQLCLWHYSTFSLFCPWVHLLHYLHPHSACASLLLFFYSH 490
           H+S    LC +   +  +F   VHL+H   P    A  +L F SH
Sbjct: 18  HTSSLKNLCTFRRRSIQVFQKIVHLVHLQTPFLLKALRILTFLSH 62


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 330 SGNSMSRRTCLDSPTFNTATGSFTAS-CSDMASTCITFNSSGLAS 199
           S NS S  +  DS +  ++T S T + C D  STC ++ ++G  +
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCT 148


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 618 SWAMQLCLWHYSTFSLFCPWVHLLHY 541
           SWA+ +C+   STF+L C    +LHY
Sbjct: 80  SWALLVCIIE-STFALICFLAVMLHY 104


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 60  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 176
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 60  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 176
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +3

Query: 3   ILSCNGVARERVAKNLNKLVKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTH---AATSS 173
           IL  +   R  +A   N+LVKS   ++  ++S  HH +S      R+  N +   A T+ 
Sbjct: 507 ILYSDRAGRVALASAFNELVKSGKVSAAIVISRDHHDVSGTDSPFRETSNVYDGSAFTAD 566

Query: 174 SFVKHC 191
             V++C
Sbjct: 567 MAVQNC 572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,148
Number of Sequences: 27780
Number of extensions: 238591
Number of successful extensions: 754
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)