Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_P11
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.0  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   9.5  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   9.5  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   9.5  

>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 400 DIISFSSE-KVLLSGVAYTITLIYIVCLLLTYLFGVSV 510
           D+  FSSE K +LS +   + L  I CL +TY    SV
Sbjct: 134 DVARFSSEEKKILSRIRRKLDLRIITCLWITYFLSRSV 171


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
 Frame = -2

Query: 539 ASHNRYAWACTETPNRYVNN----RHTM*INV-IVYATPESRTFSDENEIISRAKRNPVG 375
           A   RY   C E P  + +     R     N+  +Y T  S+ F      I R  R P+ 
Sbjct: 785 ARMERYLQLCNEDPREFPSEEKLQRQHQDCNIQAIYVTKPSQYFHALRRNIHRQFRKPLV 844

Query: 374 IFF 366
           IFF
Sbjct: 845 IFF 847


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 403 IISFSSEKVLLSGVAYTITLIYIVCL 480
           +  F+ E  L  GVAYT  ++ + C+
Sbjct: 115 LYEFTCENCLQEGVAYTFEMVALQCM 140


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 334 CVI*SEHV*LNSLIFLRCYHP*SIILRCT 248
           C++ ++    N  ++L CY   S++L+CT
Sbjct: 549 CLLNADLAFENVPLYLHCYEKGSVVLKCT 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,470
Number of Sequences: 5004
Number of extensions: 52060
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)