Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_P11
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0501 - 3682100-3682148,3682263-3682341,3682434-3682511,368...    28   7.4  
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366...    27   9.8  

>01_01_0501 -
           3682100-3682148,3682263-3682341,3682434-3682511,
           3682770-3682866,3682944-3683029,3683310-3683381,
           3683451-3683520,3683988-3684110,3684212-3684370,
           3684443-3684730,3685652-3685725,3686107-3686344
          Length = 470

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
 Frame = +1

Query: 328 LRNDISGVIEEYKKKIPTGF--------RLARDIISF-----SSEKVLLSGVAYTITLIY 468
           L NDI G + +  +K+ TGF         L   II+F      +  ++ SGV + + ++ 
Sbjct: 248 LLNDILGSVPKRSQKVATGFDLILSCITNLVTFIITFHDHPEHTTSLITSGVGFVLNVVE 307

Query: 469 IVCLLLTYLFG 501
           IV L++  + G
Sbjct: 308 IVLLVIVTIMG 318


>05_07_0212 +
           28434612-28435931,28436012-28436044,28436557-28436670,
           28436767-28437102,28437221-28437283,28437364-28437519,
           28437650-28437715,28439074-28439310,28439403-28439678,
           28440060-28440248,28440459-28440620
          Length = 983

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 289 EILGYSTRHALIK-LRNDISGVIEEYKKKIPTGFRLARDIISFSSEKV 429
           EI  Y   + LI  LRN + G++E  ++++P G    R + S  S KV
Sbjct: 841 EIRLYKVIYDLIDDLRNAMEGLLELAEEEVPIGSAKVRAVFSSGSGKV 888


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,369,251
Number of Sequences: 37544
Number of extensions: 263619
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)