Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_P09
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21721| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 3e-35
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29) 30 1.9
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 30 1.9
SB_54086| Best HMM Match : Phage_integrase (HMM E-Value=0.68) 28 5.7
SB_32169| Best HMM Match : SNF (HMM E-Value=7.9e-16) 28 5.7
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_25884| Best HMM Match : Prothymosin (HMM E-Value=6.3) 28 7.6
>SB_21721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 145 bits (351), Expect = 3e-35
Identities = 73/130 (56%), Positives = 95/130 (73%)
Frame = +1
Query: 259 TLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAAL 438
TLQ LEKAY+RD V +EYTAACS+LLVQYK AFK VQ+ ++P +EAF+ K+RLDCPAAL
Sbjct: 3 TLQCLEKAYIRDAVTPREYTAACSKLLVQYKAAFKLVQSADYPTVEAFMKKFRLDCPAAL 62
Query: 439 ERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRL 618
ER++E +P IKDDKG+T+K IA+ VS +QP+LRDL DTM +
Sbjct: 63 ERVKEGRPITIKDDKGSTSKAIADTVS------------------VQPDLRDLMDTMATM 104
Query: 619 SMLPDDFEGK 648
++LP+DF+GK
Sbjct: 105 AILPEDFDGK 114
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 31.5 bits (68), Expect = 0.62
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -2
Query: 557 NSRRS-LSIRVINNDTISAMYLLVFPLSSLMRFGLFSLIRSKAAGQSNLYLATKASILGN 381
+S+RS LS R ++ DTIS L + + R+ A ++N+Y AT+A++
Sbjct: 1744 DSQRSVLSRRHMDADTISYCGLTRATRYKTAKTKVNHATRAIVATKANVYHATRATVATK 1803
Query: 380 SSACTCLKATLYCTRRRLHAAVYSCARTQSRM 285
+ C +AT+ T+ ++ A + T++++
Sbjct: 1804 AKVCHATRATV-ATKANVYHATRATVATKTKV 1834
>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
Length = 690
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +1
Query: 259 TLQHLEKAYMRDCVRAQEY---TAACSRL----LVQYKVAFKQVQADEFPNIEAFVAKYR 417
T +H+ + + D R QEY T +L L+Q K DEF +E K
Sbjct: 371 TFRHVIEIHREDTSRKQEYWQDTVKSLQLKNKKLLQEKRELLIKNRDEFTKLEEEKQKAV 430
Query: 418 LDCPAALERIRENKPNLIKDDKGNTNKYI 504
D A L+ + +++KD K NK I
Sbjct: 431 YDLTAMLDEKQAKYTSMLKDLKNERNKII 459
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/111 (18%), Positives = 50/111 (45%)
Frame = +1
Query: 271 LEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIR 450
++KA RD + E + C ++ + + ++ + + K + +++ +
Sbjct: 176 IDKAKYRDII--DEALSKCRDIIDKAQSKYRDIIDKAQSKYRDIIDKAQSKYRDIIDKAQ 233
Query: 451 ENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRD 603
N ++I + N I + S + ++DK + ++R +D Q + RD+ D
Sbjct: 234 SNYRDIIDKAQSNYRDIIDKAQSKYRDIIDKAQSKYRDIDKAQSKYRDIID 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/122 (20%), Positives = 56/122 (45%)
Frame = +1
Query: 238 ELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYR 417
EL A + L + + ++ +Y + +Y+ + Q +++ +I+ +KYR
Sbjct: 30 ELKAKFKREEKLHRDIIDKALQQSKYRDIIEKARSKYRDIIDKAQ-NKYRDIDKAQSKYR 88
Query: 418 LDCPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDL 597
D A + R+ +I+ + I + S + ++DK + ++R +D Q + RD+
Sbjct: 89 -DIDKAQSKYRD----IIEKSRSKYRDIIDKAQSKYRDIIDKAQSKYRDIDKAQSKYRDI 143
Query: 598 RD 603
D
Sbjct: 144 ID 145
>SB_54086| Best HMM Match : Phage_integrase (HMM E-Value=0.68)
Length = 282
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 158 KIHVRNCMKRLNCTKMRVNEK----SMITWLSSMLSSVPFSTWRRHTCVIVCEHRNTRRH 325
++++++ MK C N++ S +T L+ +++ +PF +WR E R R
Sbjct: 205 EVNIQDIMKSAGCWPSIYNDRDWNNSGVTQLNRLVAHLPFVSWRNSE-----EARTDRPS 259
Query: 326 AVVSSCSTKWLSNKYRLMS 382
+ S + +W +Y L++
Sbjct: 260 QQMRSLNGEWRLMRYFLLT 278
>SB_32169| Best HMM Match : SNF (HMM E-Value=7.9e-16)
Length = 258
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2
Query: 230 LSCFSRSRAFLYNLISSYNSGRVSCIFIISSQI 132
LSC S+ F++NL S++ G +S +F++ ++
Sbjct: 92 LSCVSKGGMFVFNLFDSFSCG-LSLLFVVCFEL 123
>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1332
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = -2
Query: 230 LSCFSRSRAFLYNLISSYNSGRVSCIFIISSQI 132
LSC S+ +++NL S++ G +S +F+++ ++
Sbjct: 1224 LSCVSKGGMYVFNLFDSFSCG-ISLLFLVTFEL 1255
>SB_25884| Best HMM Match : Prothymosin (HMM E-Value=6.3)
Length = 175
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 223 HDNMAELYAVVCTLQHLEKAYMRDCVRAQ 309
H++ + + CT +H E YM+ C+ Q
Sbjct: 123 HEHSEDGHTKTCTHEHSEDGYMKTCIHEQ 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,522,910
Number of Sequences: 59808
Number of extensions: 426481
Number of successful extensions: 3553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3548
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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