Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_P05
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    28   1.0  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   2.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   2.4  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.1  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    26   4.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.5  

>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 483 EPVQLGPNTVILYEQSGNPSNFAFGGMWTM---DSSGR 587
           E  +L P  V+ +++SG P  FAFGG   +   D +GR
Sbjct: 57  EAGELPPVDVLTFKKSGKPYYFAFGGCHRLRAHDEAGR 94


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 499 VRTLSSFTSRAGTPRILPLAVCGLWTPR 582
           VRT +    +  TPR+ P+  C L TPR
Sbjct: 59  VRTPTKIKEKYSTPRLSPVHRCALPTPR 86


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 500 TELHWLPFHVDEDRLLEVPFD*LASVH 420
           T LH++P+HVD D   E+P   L   H
Sbjct: 479 TMLHYIPYHVDLDDTDELPLAELIMNH 505


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 417 IVHTGQLVE---GNFEQPVFVNMKGEPVQLGPNTVILYEQSGNPSNFAFG 557
           I   G ++E   G+  QP     +GEP         ++  SGNP ++A+G
Sbjct: 299 ITDLGSILERIFGSLNQPGAQQGEGEPFNPANMFSNIFNLSGNPGDYAWG 348


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 32  VLFTLPQTDISQITHG---KQRLMFIYITECHR 121
           V F  PQT ++ I HG   + R+  + I E HR
Sbjct: 168 VFFVTPQTILNDIKHGICDRTRISCLVIDEAHR 200


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 490 TGSPFMLTKTGCSKFPSTNWPVCT 419
           TGSP  +T T C+   S + P+ T
Sbjct: 66  TGSPVEITSTSCTTDTSASTPIIT 89


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 578 GVHSPHTAKGKIRG 537
           GV+ PH AKG++ G
Sbjct: 316 GVYQPHIAKGRVNG 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,872
Number of Sequences: 5004
Number of extensions: 45939
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)