Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_P05
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976           29   3.2  
08_02_0187 - 13978194-13979093,13980332-13980679                       29   4.3  
05_05_0389 + 24590331-24590529,24591068-24591392,24591519-245916...    29   4.3  
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773...    27   9.9  

>07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976
          Length = 562

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 147 VYLTVLNENRWHSVM*INISLCFPCVI 67
           VYLTVL   RW + + I I  C P V+
Sbjct: 523 VYLTVLPTERWLAYLVIAIGACTPAVV 549


>08_02_0187 - 13978194-13979093,13980332-13980679
          Length = 415

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 13  NGVSLSCPFHTAANR---HFSNYTRKTKTNVYLHHRMPSVF 126
           NG++L CP   A +     + N T K K  + L+H +P  +
Sbjct: 223 NGLTLFCPVDAAVDAFLPKYKNLTAKGKAAILLYHAVPDYY 263


>05_05_0389 +
           24590331-24590529,24591068-24591392,24591519-24591617,
           24591861-24592006,24592519-24592574
          Length = 274

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 423 HTGQLVEGNFEQPVFVNMKGEPVQLGPNTVILYEQSGNPSNFAFGG 560
           H+G+   G ++  V+V +KG+ V L    ++ Y      S+ A GG
Sbjct: 77  HSGRETAGRWQNTVWVMVKGDKVALSKTCLLRYYHKKLKSSSANGG 122


>03_06_0344 -
           33276366-33276548,33277044-33277169,33277254-33277322,
           33277401-33277505,33277595-33277633,33277717-33278016,
           33278093-33278182,33278271-33278312,33278433-33278516,
           33278762-33278947,33279218-33279403,33279663-33280025
          Length = 590

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 60  FLKLHTENKD*CLFTSQNAIGFHLKLLNTLSI 155
           FLK     K    F+S N++ FH +LLN L I
Sbjct: 342 FLKKKQNKKVMVFFSSCNSVKFHAELLNFLQI 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,557
Number of Sequences: 37544
Number of extensions: 280029
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)