Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_P04
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)              112   3e-25
SB_4956| Best HMM Match : ThiF (HMM E-Value=0)                         62   5e-10
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   5e-10
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                  42   6e-04
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_59561| Best HMM Match : Pox_A32 (HMM E-Value=0.077)                 31   1.1  
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     29   2.5  
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     29   2.5  
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               29   3.3  
SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.3  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.8  
SB_50299| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)                 28   7.6  

>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score =  112 bits (269), Expect = 3e-25
 Identities = 61/142 (42%), Positives = 86/142 (60%)
 Frame = +2

Query: 176 TEISELRRIXXXXXXXXXXXXXXISDQQSSKELNNHSQPISDASKSSVDACLPKWAIERY 355
           TEI +LR                + +++  KEL +     S  ++ + +  L    I RY
Sbjct: 5   TEIEQLREEIAKQTKKLEHMKAILREKE--KELQSRINIPSKQNEKTKN--LTNSEISRY 60

Query: 356 SRQILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVH 535
           SRQ++L +IGV+GQ  + S+ VL+VGAGGLGCPAA+YLA AGIG +G+VDYD VD +N+H
Sbjct: 61  SRQLILPEIGVKGQQSLKSSSVLVVGAGGLGCPAALYLAAAGIGCLGLVDYDVVDTSNLH 120

Query: 536 RQLLHHESNENTSKAFSAAESL 601
           RQ+LH E      K  SA ++L
Sbjct: 121 RQVLHTEDRVEVPKVESAKQTL 142


>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
          Length = 213

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = +2

Query: 365 ILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQL 544
           +L   +G     K+ ++K+L+VGAGG+GC     L   G   I ++D D +D++N++RQ 
Sbjct: 8   VLAGTLGGSLADKVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQF 67

Query: 545 LHHESNENTSKAFSAAES 598
           L H+ +   SKA  A ES
Sbjct: 68  LFHKQHVGKSKAKVARES 85


>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = +2

Query: 365 ILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQL 544
           +L   +G     K+ ++K+L+VGAGG+GC     L   G   I ++D D +D++N++RQ 
Sbjct: 8   VLAGTLGGSLADKVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQF 67

Query: 545 LHHESNENTSKAFSAAES 598
           L H+ +   SKA  A ES
Sbjct: 68  LFHKQHVGKSKAKVARES 85


>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
 Frame = +2

Query: 350 RYSRQILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLA--GAGIGEIGIV---DYDA 514
           RY  QI +   G E Q K+   K  +VGAG +GC      A  G G GE G +   D D 
Sbjct: 324 RYDGQIAV--FGSEFQKKLGQQKYFVVGAGAIGCEHLKNFAMMGLGSGEGGHIYTTDMDT 381

Query: 515 VDLTNVHRQLLHHESNENTSKAFS 586
           ++ +N++RQ L   ++   ++ ++
Sbjct: 382 IEKSNLNRQFLFRPADVQLTEVYN 405



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
 Frame = +2

Query: 263 SKELNNHSQPISD---ASKSSVDACLPKWAIERYSRQILLSDIGVEGQVKICSAKVLIVG 433
           +  +NN SQ + D   A K  +D  L       YSRQ+ +  +G E   K+  + VLI G
Sbjct: 34  NNHVNNSSQSVRDEGQAEKMDIDEGL-------YSRQLYV--LGHEAMKKMAVSNVLISG 84

Query: 434 AGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQLLHHESNENTSKA 580
             GLG   A  +   G+  + + D  AV+L+++  Q   ++ +   ++A
Sbjct: 85  LRGLGVEIAKNVVLGGVKSVTLHDTGAVELSDLTSQFFLNKKDVGKNRA 133


>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 26/84 (30%), Positives = 40/84 (47%)
 Frame = +2

Query: 353 YSRQILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNV 532
           YSRQ  +  +G +   K+  A V + G GGLG   A  L  AGI  I + D  A  + ++
Sbjct: 12  YSRQRYM--LGDQAMQKMAHASVFLSGVGGLGVEIAKNLTLAGIKSITLHDTRAASMADL 69

Query: 533 HRQLLHHESNENTSKAFSAAESLR 604
             Q    E +  +S+  + A + R
Sbjct: 70  GSQFFLREDDVTSSRNRAVASAGR 93


>SB_59561| Best HMM Match : Pox_A32 (HMM E-Value=0.077)
          Length = 986

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/65 (36%), Positives = 31/65 (47%)
 Frame = +1

Query: 355 QSSDPSLGHRRRRTG*DLFCQSTDCGSRRPGMSGCHVPCRGGHWRNRHRGL*RGGSDQRA 534
           QS   S   R+RR    L  +S+  G RR      H    GGH  +RH+G   G S  R+
Sbjct: 686 QSGTESTERRKRRFVSPL--RSSFRGRRR---DSAHKATAGGHRPDRHQGARSGDSASRS 740

Query: 535 QTTAA 549
           Q +AA
Sbjct: 741 QVSAA 745


>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 504 STMPIS-PMPAPARYMAAGHPRPPA-PTISTLAEQ 406
           S++P+S P P PA Y   G P PPA P + T   Q
Sbjct: 40  SSVPVSYPGPPPAMYAVPGMPMPPAYPGMPTYPPQ 74


>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 380 IGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEI 493
           +  + Q ++ + KVLI+GAG  G  AA  L   G+G I
Sbjct: 29  VNAQQQHQVYTTKVLILGAGVAGIAAASVLHEEGVGFI 66


>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 88  VIECVFSCRCCSQKNI 135
           V++C FSCR CSQ++I
Sbjct: 928 VVQCPFSCRFCSQRSI 943


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 495 PISPMPAPARYMAAGHPRPPAPTISTLAEQILTCPSTPMSERR 367
           P +  PAP    AA  P P AP+ +     + + PST  S  R
Sbjct: 99  PAAAAPAPVPAAAAPAPAPAAPSAAAAPAPVRSVPSTSPSSVR 141


>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -1

Query: 522 RSTAS*STMPISPMPAPARYMAAGHPRPPAPTISTLAEQILTCPSTPMSERRI*RLYLSI 343
           RS  S    P     AP+R  +A  P P  P ++  ++   +  ++P S RR  ++   I
Sbjct: 380 RSAGSVPKSPAVREEAPSRPSSARRPLPRPPVLTPRSKGNPSISNSPRSRRRY-KVSSGI 438

Query: 342 AHFGRQASTDD 310
            H    A  DD
Sbjct: 439 GHHQTSADDDD 449


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 439  RPGMSGCHVPCRGGHWRNRHRGL*RGGSDQRAQTTAAP*KQREHQQGVLGR 591
            RPG  G H+  +G   R+RH      G D    T+++    R H+ G  GR
Sbjct: 5235 RPGYYGKHLK-KGRSSRHRHHNSEGIGDDDTDNTSSSTAPTRSHRHGSRGR 5284


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -1

Query: 495 PISPMPAPARYMAAGHPRP---PAPTISTLAEQILTCP---STPMSERRI*RLYL 349
           P  P+P+P+ +    +PRP   P P+ ST A     CP     P +  R    YL
Sbjct: 345 PHLPVPSPSTHALTFYPRPQFLPMPSPSTRALTFYPCPHLLPVPSTSTRALNFYL 399


>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 406 DLNL-SFDADVREKDLTTVPFYRPF 335
           DLN  +FD  +REKD+  V FY P+
Sbjct: 24  DLNAQNFDQMIREKDIMLVDFYAPW 48


>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 114 TTRKYTLNNIRHLSTVCTLLIRQ--HNKCIIYVDNLI 10
           T   + L N RH+S +    +R   +N C++Y+D++I
Sbjct: 492 TRMPFGLTNARHVSRLMEHCLRDLNYNTCVVYMDDVI 528


>SB_50299| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
          Length = 465

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 403 DLFCQSTDCGSRRPGMSGCHVPCRGGHWRNRHRGL*RGGSDQRA 534
           ++ C+  +      G SGCHVP   G       G+  G  D +A
Sbjct: 392 EVACKGNESSCEGDGPSGCHVPANAGF--EEDHGVFHGMGDSKA 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,256,987
Number of Sequences: 59808
Number of extensions: 460595
Number of successful extensions: 1422
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)