Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_P04
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 102 3e-22
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 62 4e-10
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 60 2e-09
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 50 1e-06
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 49 3e-06
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 41 9e-04
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 41 9e-04
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 40 0.001
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 40 0.001
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 37 0.014
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 31 0.71
Z81485-2|CAB03974.2| 708|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL032646-9|CAA21684.1| 305|Caenorhabditis elegans Hypothetical ... 29 2.9
Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical pr... 29 3.8
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 29 3.8
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 29 3.8
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 29 3.8
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 29 3.8
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 28 5.0
U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical pr... 27 8.8
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 102 bits (244), Expect = 3e-22
Identities = 47/85 (55%), Positives = 60/85 (70%)
Frame = +2
Query: 350 RYSRQILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTN 529
RYSRQ+L+ D GV GQ + + VLIVGAGGLGCP A YL AGIG IGIVDYD + L N
Sbjct: 17 RYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDYDHISLDN 76
Query: 530 VHRQLLHHESNENTSKAFSAAESLR 604
+HRQ+ + E SKA + A++++
Sbjct: 77 LHRQVAYKEDQVGKSKAQALADNIK 101
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 61.7 bits (143), Expect = 4e-10
Identities = 25/72 (34%), Positives = 47/72 (65%)
Frame = +2
Query: 389 EGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQLLHHESNEN 568
E KI +K+L++GAGG+GC LA G ++ ++D D +D++N++RQ L + + +
Sbjct: 6 EKHEKIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVS 65
Query: 569 TSKAFSAAESLR 604
+SKA +A + ++
Sbjct: 66 SSKAATATQVVK 77
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +2
Query: 383 GVEGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQLLHHESN 562
G E + + K+L++GAGGLGC LA +G I ++D D +D++N++RQ L ES+
Sbjct: 33 GPENFEALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESD 92
Query: 563 ENTSKAFSAA 592
SKA AA
Sbjct: 93 VGKSKAEVAA 102
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 353 YSRQILLSDIGVEGQV-KICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTN 529
YSR + L +G+ + +I V +VG GG+G A L GIG++ + DYD V++ N
Sbjct: 64 YSRLMALQRMGIVNEYERIREKTVAVVGVGGVGSVVAEMLTRCGIGKLILFDYDKVEIAN 123
Query: 530 VHRQLLHHESNENTSKAFSAAESL 601
++R L + + SK +A ++L
Sbjct: 124 MNR-LFYQPNQAGLSKVEAARDTL 146
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/80 (38%), Positives = 44/80 (55%)
Frame = +2
Query: 353 YSRQILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNV 532
Y RQI L G+E Q KI ++KVLI+G LG A L+ AG+ E+ +VD+ VD +
Sbjct: 11 YDRQIRLW--GMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDHRLVDTEEI 68
Query: 533 HRQLLHHESNENTSKAFSAA 592
L+ S +N+ AA
Sbjct: 69 GMNFLYDASVDNSKMTKWAA 88
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 40.7 bits (91), Expect = 9e-04
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +2
Query: 266 KELNNHSQPIS-DASKSSVDACLPKWAIERYSRQI---LLSDIGVEGQVKICSAKVLIVG 433
+ N+ QPIS D SK L + +++ I L DI +E + KVLI+G
Sbjct: 275 RNANDKLQPISVDLSKEFDPKILMERSVDLNLSLIKWRLHPDIQLE---RYSQLKVLILG 331
Query: 434 AGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQLL 547
AG LGC A L G G+ I +D V N RQ L
Sbjct: 332 AGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSL 369
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 40.7 bits (91), Expect = 9e-04
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +2
Query: 266 KELNNHSQPIS-DASKSSVDACLPKWAIERYSRQI---LLSDIGVEGQVKICSAKVLIVG 433
+ N+ QPIS D SK L + +++ I L DI +E + KVLI+G
Sbjct: 275 RNANDKLQPISVDLSKEFDPKILMERSVDLNLSLIKWRLHPDIQLE---RYSQLKVLILG 331
Query: 434 AGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQLL 547
AG LGC A L G G+ I +D V N RQ L
Sbjct: 332 AGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSL 369
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Frame = +2
Query: 299 DASKSSVDACLPKWAIERYSRQILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGA 478
D SK S C P+ + RY Q + G Q + + +VGAG +GC L+
Sbjct: 399 DNSKLSETDCQPRQS--RYDGQAAV--FGWPYQECLFRQRWFVVGAGAIGCELLKNLSMM 454
Query: 479 GI-----GEIGIVDYDAVDLTNVHRQLLHHESNENTSKAFSAAESL 601
G+ G I I D D ++++N++RQ L + K+ AA ++
Sbjct: 455 GVACGEGGLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAV 500
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Frame = +2
Query: 299 DASKSSVDACLPKWAIERYSRQILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGA 478
D SK S C P+ + RY Q + G Q + + +VGAG +GC L+
Sbjct: 484 DNSKLSETDCQPRQS--RYDGQAAV--FGWPYQECLFRQRWFVVGAGAIGCELLKNLSMM 539
Query: 479 GI-----GEIGIVDYDAVDLTNVHRQLLHHESNENTSKAFSAAESL 601
G+ G I I D D ++++N++RQ L + K+ AA ++
Sbjct: 540 GVACGEGGLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAV 585
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/84 (28%), Positives = 37/84 (44%)
Frame = +2
Query: 350 RYSRQILLSDIGVEGQVKICSAKVLIVGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTN 529
RY RQ+ L G EGQ I S ++G+ L L AG+ +VD V+ +
Sbjct: 9 RYDRQVRLW--GEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQAD 66
Query: 530 VHRQLLHHESNENTSKAFSAAESL 601
+ + H + S+A + E L
Sbjct: 67 IGQNFFLHADDIGRSRAEATLEKL 90
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 495 PISPMPAPARYMAAGHPRPPAPTISTLAEQILTCPSTP 382
P +P+P P + P PP P +S L ++L P+TP
Sbjct: 154 PPTPIPTPVPILEPPPPPPPVPPLSPL-YKVLEIPATP 190
>Z81485-2|CAB03974.2| 708|Caenorhabditis elegans Hypothetical
protein C49F5.2 protein.
Length = 708
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 94 ECVFSCRCCSQKNIIKLIRNGQSQCFRDGNIRTSQN 201
E V C+CCSQ ++ N CF S+N
Sbjct: 363 ENVIRCKCCSQDPVVNCFDNKDCPCFIANQFLQSRN 398
>AL032646-9|CAA21684.1| 305|Caenorhabditis elegans Hypothetical
protein Y54E2A.10 protein.
Length = 305
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 313 ISRCLSSKMGDRKVQSSDPSLGHRRRRTG 399
++ C+S KMG R+ +S P G+ + R G
Sbjct: 237 VANCISEKMGQRRQKSLVPKRGNEKFRAG 265
>Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical
protein F34H10.4 protein.
Length = 452
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 278 NHSQPISDASKSSVDACL--PKWAIERYSRQILLSDIG 385
NH QP S S D P WAIE ++ + + ++G
Sbjct: 125 NHDQPAEQPSDKSTDDSTGYPPWAIEAFNSESNIKNVG 162
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 319 RCLSSKMGDRKVQSSDPSLGHRRRRTG*DLFCQ 417
+C+SS M D +VQS +G R ++ +CQ
Sbjct: 80 KCISSGMRDDQVQSERDVIGKREKKDNMKTYCQ 112
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 319 RCLSSKMGDRKVQSSDPSLGHRRRRTG*DLFCQ 417
+C+SS M D +VQS +G R ++ +CQ
Sbjct: 136 KCISSGMRDDQVQSERDVIGKREKKDNMKTYCQ 168
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 319 RCLSSKMGDRKVQSSDPSLGHRRRRTG*DLFCQ 417
+C+SS M D +VQS +G R ++ +CQ
Sbjct: 81 KCISSGMRDDQVQSERDVIGKREKKDNMKTYCQ 113
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 319 RCLSSKMGDRKVQSSDPSLGHRRRRTG*DLFCQ 417
+C+SS M D +VQS +G R ++ +CQ
Sbjct: 102 KCISSGMRDDQVQSERDVIGKREKKDNMKTYCQ 134
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 489 SPMPAPARYMAAGHPRPPAPTISTLAEQILTCPSTPMSERRI 364
SP P PA + P PP P I+T + P P E+ I
Sbjct: 477 SPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPALEQEI 518
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 495 PISPMPAPARYMAAGHPRPPAPTISTLAEQILTC 394
P+ PAPA AA PPAP I+ A+ L C
Sbjct: 80 PVFAAPAPAPVFAAPFAAPPAPVIA--AQPALGC 111
>U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical
protein T01C8.5 protein.
Length = 408
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -2
Query: 542 VVCARWSDPPRHNPRCLFR--QCPPRQGTWQPDI 447
V+ A WS+PP H R + + P R+ W I
Sbjct: 283 VIRANWSNPPAHGARIVHKVLTTPARREQWNQSI 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,755,054
Number of Sequences: 27780
Number of extensions: 322684
Number of successful extensions: 1063
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -