Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_P04
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.64 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 188 LIFPSLKH*LCPFRINLIIFF--CEQQRQENTHSITYGTYLLFAL 60
           L FPS+   +    I +I FF  C   R+ +  +IT+ ++LLF L
Sbjct: 48  LAFPSITLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFIL 92


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 498 MPISPMPAPARYMAAGHPRPPAPTISTLAEQILTCPSTPMSERR 367
           +P+S +P P++  A GH +      S    Q  T PS   S RR
Sbjct: 368 IPLSAIPEPSKNPAMGHWQMSCVACSPPPRQ--TPPSRKESGRR 409


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 550 VQQLSVHVGQIHRVIIHDAYFANARPGKVHGSRTS 446
           V+ LSV    I  + + D +F N +    H + TS
Sbjct: 80  VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 114


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 550 VQQLSVHVGQIHRVIIHDAYFANARPGKVHGSRTS 446
           V+ LSV    I  + + D +F N +    H + TS
Sbjct: 80  VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 114


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 550 VQQLSVHVGQIHRVIIHDAYFANARPGKVHGSRTS 446
           V+ LSV    I  + + D +F N +    H + TS
Sbjct: 19  VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 53


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 459 AAGHPRPPAPTISTLA 412
           +AG P PP P +S ++
Sbjct: 412 SAGAPMPPIPNMSNMS 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,520
Number of Sequences: 438
Number of extensions: 4262
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)