Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O24
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   135   2e-33
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    26   2.1  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   6.4  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    24   8.5  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  135 bits (327), Expect = 2e-33
 Identities = 58/82 (70%), Positives = 69/82 (84%)
 Frame = +3

Query: 36  MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 215
           M LA+DLL+PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+
Sbjct: 1   MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60

Query: 216 TILCQPTGGRARLTEGCSFSKK 281
           ++LCQPTGG+ARL EGCSF +K
Sbjct: 61  SVLCQPTGGKARLMEGCSFRRK 82


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 279 SSKKNILQLI*HGHQWVDKGSLSIQRRP 196
           S K ++L+ I  GH+++ KGS  + RRP
Sbjct: 274 SGKSSVLEAI-VGHEFLPKGSNMVTRRP 300


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 197 HHSLCVTKNCCNLVTARALNIHEIRVRMW 111
           +H+L   ++ C L  ++ L+ H I +R W
Sbjct: 37  YHALKAKESTCFLTFSKTLDEHAISMRKW 65


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 132 MDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFSKKTTL 290
           +D +C  C +     S+A  +V C  C+T + Q   G   + EG  F KK  L
Sbjct: 193 LDGRCVICNEAECENSNA--IVFCDNCNTSVHQNCYGIPFVPEGQWFCKKCLL 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,520
Number of Sequences: 5004
Number of extensions: 31210
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)