Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O24
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.20 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.20 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.20 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.20 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.20 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.20 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.20 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.20 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   4.3  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   10.0 

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 KKTTLTFKSWTEPYLILRFFFQLYNGVIFF 365
           KK T+T++   EPY+ + F  Q+    +++
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 KKTTLTFKSWTEPYLILRFFFQLYNGVIFF 365
           KK T+T++   EPY+ + F  Q+    +++
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 KKTTLTFKSWTEPYLILRFFFQLYNGVIFF 365
           KK T+T++   EPY+ + F  Q+    +++
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 KKTTLTFKSWTEPYLILRFFFQLYNGVIFF 365
           KK T+T++   EPY+ + F  Q+    +++
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 KKTTLTFKSWTEPYLILRFFFQLYNGVIFF 365
           KK T+T++   EPY+ + F  Q+    +++
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 KKTTLTFKSWTEPYLILRFFFQLYNGVIFF 365
           KK T+T++   EPY+ + F  Q+    +++
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYY 197


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 KKTTLTFKSWTEPYLILRFFFQLYNGVIFF 365
           KK T+T++   EPY+ + F  Q+    +++
Sbjct: 236 KKNTITYQCCPEPYVDVTFTIQIRRRTLYY 265


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 276 KKTTLTFKSWTEPYLILRFFFQLYNGVIFF 365
           KK T+T++   EPY+ + F  Q+    +++
Sbjct: 236 KKNTITYQCCPEPYVDVTFTIQIRRRTLYY 265


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 173 F*SRTESGGLRWMLNDPLSTHWW 241
           F  R  +G  +W++N+     WW
Sbjct: 24  FLKRPITGDEKWVVNNIKRKRWW 46


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 197 HHSLCVTKNCCN 162
           HH + + KN CN
Sbjct: 24  HHKILIKKNKCN 35


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 361 FSXFTTMDPSEHYK 402
           F  FT   PS+HY+
Sbjct: 254 FEYFTRTIPSDHYQ 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,737
Number of Sequences: 438
Number of extensions: 2351
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)