Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O21
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    25   7.2  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   7.2  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   9.5  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   9.5  

>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
 Frame = +3

Query: 210 IPVNTFLEWNLEAELYAFGKRLNEEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDN 389
           +PVNT LEWN+          LN+    + +++   DR      E +++ + +   M DN
Sbjct: 51  LPVNTSLEWNM----------LNQGIPEEAMIKELKDR------EGRKRNIAM---MTDN 91

Query: 390 MELIAEGEKFI---NEYVQLYLETVLPKFPLEGVNEVRNYLTNEDRLAKI----SLSLGT 548
              +  G++ +   N   +  L+T   +   EG +   NY+   ++L +I    S SL T
Sbjct: 92  YISLETGDQLMLAQNHKEEKLLQTE-DEIQDEGYSGFENYVEESEKLQEIYHHSSESLRT 150

Query: 549 KDIILAAE 572
           + I +A +
Sbjct: 151 RSIQMAVD 158


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/83 (24%), Positives = 40/83 (48%)
 Frame = -1

Query: 649 SSLVDSNKAATMALKVFAKM*LSTGYSAASMMSLVPRLKEILASLSSFVR*FLTSFTPSN 470
           SS++ S+ +++ +    +    S+  S++S  S    +    +S SSF     +S   S+
Sbjct: 270 SSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSS 329

Query: 469 GNFGKTVSR*SCTYSFMNFSPSA 401
            +F  + +  S T S  + SPS+
Sbjct: 330 SSFSSSPTSSSSTISSSSSSPSS 352


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 38  LKQKLIKMALMRRCAPLFARCIKIPPMTLQSQKIHRW 148
           L QK+ K  L     P  + CI + P++  S ++HRW
Sbjct: 345 LAQKVEKTVL--DAIPALSSCI-VTPLSSDSNQVHRW 378


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +3

Query: 378 MKDNMELIAEGEKFINEYVQLYLETVLPKFPLEGVNEVRNYLTNEDRLAKISLSLGTKDI 557
           +K   +++ E   F +EY+ +       K   E +     +L +EDR+A +    GT   
Sbjct: 53  VKKASKIVEEQASFNHEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGAN 112

Query: 558 ILAAEYPVDNYILANT 605
            LAA + ++ + + +T
Sbjct: 113 FLAASF-IETFYVKHT 127


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 86  AEHIFSLVPF*LVFVSMYLFQFEC 15
           ++H+ S+V F  VFVS+Y  Q  C
Sbjct: 83  SQHLSSVVIFASVFVSIYRNQLSC 106


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 357 EMGVDIPMKDNMELIAEGEKFINEYVQLYLETVLPKFPLEG--VNEVRNYLTNEDRLAKI 530
           ++GVD P    +  +AE  KF N     Y   V P + L G  ++ +R+  + +D+L   
Sbjct: 753 KIGVDQPAWKELTSVAEASKFANAVG--YPVLVRPSYVLSGAAMSVIRDESSLKDKLENA 810

Query: 531 S 533
           S
Sbjct: 811 S 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,709
Number of Sequences: 5004
Number of extensions: 42706
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)