Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O21
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640...    29   2.4  
03_05_0213 - 22037268-22039496                                         28   7.4  
12_01_0499 - 3959843-3960058,3960158-3960235,3960315-3960389,396...    27   9.8  
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146...    27   9.8  

>11_04_0474 +
           18162538-18163731,18163800-18163855,18163951-18164011,
           18164107-18165495,18166024-18166635,18166706-18166852,
           18166941-18167209,18167322-18167412,18167500-18167757,
           18168376-18168450,18168937-18168945
          Length = 1386

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 297 NPSRILHSNVFQKHKVQPPNSIPE 226
           +P RILHSN+ QK+   PP  + +
Sbjct: 915 DPRRILHSNIVQKNDTVPPVGVEQ 938


>03_05_0213 - 22037268-22039496
          Length = 742

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +3

Query: 255 YAFGKRLNEEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDNMELIAEGEKFINEYV 434
           +A G  + EE    L      D   ++  EM+++   V + +  +     EG++  ++ V
Sbjct: 70  FAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAV 129

Query: 435 QLYLETVLPKFPLEGVNEVRNYLTN 509
            L L  + P F ++    V N+L N
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLN 154


>12_01_0499 -
           3959843-3960058,3960158-3960235,3960315-3960389,
           3960590-3960676,3960764-3960831,3961854-3961941,
           3962041-3962141,3962223-3962343,3962647-3962778,
           3962880-3962969
          Length = 351

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +3

Query: 369 DIPMKDNMELIAEGEK-FINEYVQLY--LETVLPKFPLEGVNEVRNYLTNEDRLAKISLS 539
           D   K + E  AE +  F  +Y + +  L  +  KF    VNE++++LT+   + K+S  
Sbjct: 276 DSSFKIHAEKYAEDQDAFFEDYAEAHAKLSNLGAKFDPPKVNEIKDFLTSIIGMEKMSSQ 335

Query: 540 LGTKDIILAAE 572
           L   D+++ AE
Sbjct: 336 L---DLLIIAE 343


>12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,
            1468488-1469515,1470005-1470552,1470656-1470695,
            1473774-1475196
          Length = 1085

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
 Frame = +3

Query: 258  AFGKRLNEEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDNMELIAEGEKFINEYVQ 437
            +    L     SDL +  F +R   + EE ++KE+  +   +  +  I      + +  +
Sbjct: 733  SLNSNLKGHLKSDLDIGRFLNRVERVVEEKREKELQSEYESRKKLPRIMMMTPMLVQASK 792

Query: 438  LYLETVLPKFPLEGVNEVRNYLTNEDRLAKISLSLGTKD--IILAAEYPV 581
            LY   +   F  E    +  Y    +      +++G+ D   IL  E+ V
Sbjct: 793  LYTPALFEVFQAEYEKSMATYTKGSNGSNDFIIAIGSLDDQFILEDEHKV 842


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,576,236
Number of Sequences: 37544
Number of extensions: 229795
Number of successful extensions: 423
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)