Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O20
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    28   1.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.4  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    27   3.1  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   3.1  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.2  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   9.5  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   9.5  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    25   9.5  

>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 138 NGKVLTLISSSISKIGADFSLNKVIFNYSIETQTK 34
           +G   TL+++ ++  G D  L  V+ NY I T +K
Sbjct: 333 SGARSTLVATDVAARGLDIPLVDVVINYDIPTDSK 367


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -1

Query: 165 FSSSKRANNNGKVLTLISSSISKIGADFSLNKVIFNYSIETQTKL 31
           FS+ ++A N  +  T +  +IS I     +NK++ NY+++ + +L
Sbjct: 340 FSNDQKAENPFEWATSLLKTISIIDEVELINKILINYTMQYKKEL 384


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -2

Query: 575 HNEKISSVFI-NLAPFLILINAFKTLLLSKLITALAM*FICILSFDECAIQSLCKIIIIL 399
           H E+I   FI N A  + LI +FK+ +LS ++             DE +I + CKI++ +
Sbjct: 67  HIERIVDSFIDNEAGSVYLITSFKSFVLSDVM-------------DEISIDTKCKIVLQI 113

Query: 398 STPRITL*SFQ*LHKLV*PQRI 333
           S+    L     LH+ + P  I
Sbjct: 114 SSALEYLEKHGILHRDIHPNNI 135


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +2

Query: 110 DDINVNTLPLLFALLEDEKNVINFHIYEHQEELWKEAFKK 229
           +DI ++++P +  LL D  + I +++  H+E + K   ++
Sbjct: 333 EDIEIDSIPAVRRLLGDVMSDIPYYMSHHKESIIKSVIRE 372


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 162 SSSKRANNNGKVLTLISSSISKIGADFSLN 73
           SSS   N+NG V  L S S++    D  LN
Sbjct: 510 SSSSHNNHNGNVRNLHSGSMNNYNTDSLLN 539


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 167 NVINFHIYEHQEELWKEAF 223
           +VINF IYE  E LW + F
Sbjct: 137 SVINF-IYEKNERLWSDPF 154


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 312 DSVHQMFYSLGSNKFMKLLKRLQGNPWCR 398
           D +  +F  L +  F  +LKRL   PW R
Sbjct: 21  DQLKLLFCFLSAYPFAGILKRLPSAPWIR 49


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 98  LLIEDDINVNTLPLLFALLEDEKNVINFHIYEHQEELWKE 217
           L I+D + V T P +   + +E +  +F +    +E WKE
Sbjct: 398 LYIDDSVYVFTRPGVIIAISNEGSTSSFKVEIDLKEHWKE 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,332
Number of Sequences: 5004
Number of extensions: 48619
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)