Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_O20
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 30 8.3
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 30 8.3
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 30 8.3
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 30 8.3
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 30 8.3
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 30 8.3
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 30 8.3
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 30 8.3
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 30 8.3
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 30 8.3
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1301 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1346
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1301 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1346
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1301 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1346
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1301 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1346
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1301 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1346
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1301 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1346
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1301 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1346
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1262 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1307
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1301 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1346
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 273 YDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPWCRKDNN 410
++ Y ++PC + + M + L + K L GN W KD +
Sbjct: 1301 WEWYQEVPCFNVNAQLKPMEFILSQEDITTIFKTLHGNIWYEKDGS 1346
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,113,292
Number of Sequences: 237096
Number of extensions: 1465690
Number of successful extensions: 2600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2600
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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