Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O15
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   151   7e-38
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   116   3e-27
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   111   1e-25
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    31   0.20 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    30   0.26 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   1.8  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   5.6  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  151 bits (367), Expect = 7e-38
 Identities = 72/92 (78%), Positives = 84/92 (91%)
 Frame = +1

Query: 145 FPFGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 324
           FP GR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITPRHL
Sbjct: 66  FPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHL 125

Query: 325 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 420
           QLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 126 QLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  116 bits (279), Expect = 3e-27
 Identities = 60/103 (58%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
 Frame = +1

Query: 142 SFPFGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 321
           +FP GR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PRH
Sbjct: 26  AFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRH 84

Query: 322 LQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 447
           LQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G P
Sbjct: 85  LQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  111 bits (266), Expect = 1e-25
 Identities = 58/99 (58%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
 Frame = +1

Query: 142 SFPFGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 321
           +FP GR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PRH
Sbjct: 26  AFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRH 84

Query: 322 LQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 435
           LQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 85  LQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +1

Query: 145 FPFGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 324
           FP  RI + +       G+V     V  +  LE     +++ +   ++  + KR+T  HL
Sbjct: 24  FPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSHL 82

Query: 325 QLAIRGDEELDSL 363
           + A++  E+ D L
Sbjct: 83  KHAVQSVEQFDFL 95


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 231 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 335
           +Y G +YS G  V GKCV +F +  +     +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 344 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRPWLVVLFLRC 168
           SPL   CKC G IR+  +  L  +  +SK +     K   E T   + + P  +   + C
Sbjct: 19  SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMPRTIPFTILC 78


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 283 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 387
           +K+L + K +TP ++ + +  DE +DSLI+ +   G
Sbjct: 69  NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,645
Number of Sequences: 5004
Number of extensions: 53237
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)