Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O11
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    35   0.009
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   0.58 
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.3  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   2.3  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   4.1  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    26   4.1  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   4.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   9.5  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   9.5  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.5  

>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 23/161 (14%)
 Frame = +2

Query: 236 YKMGTRKVPVTTYVFGPSNPDHVHHYCEE---GSEIVPNVIYMGRRGLFNTSTDVKIAYL 406
           Y  G  K P+ T   G ++     +Y +E   G  + PN+ YMGR  + N    ++IA +
Sbjct: 76  YYNGRNKAPILTIFVGGNH--EASNYLDELPYGGWVAPNIYYMGRSSVINVG-GLRIAGI 132

Query: 407 TGLSRRELGKDVPMCTYE--PSDCSAVRDACFRGQSEF-------RGVDVLITTLWPSGI 559
           +G+       D     YE  P +   ++      + +        + +D+ ++  WP GI
Sbjct: 133 SGIYS---AMDYKKGRYEGLPYNYKMLKSIYHTREFDVLSLKSLQKPIDIFLSHDWPRGI 189

Query: 560 QQ--DECQTV--------DVEQDRL-SDLLSWLAIHIKPRY 649
           +Q  D  + +        +VE++ L S  L  L + +KPRY
Sbjct: 190 EQHGDVAKLLRHKPFFRNEVERNDLGSPALEELLVELKPRY 230


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 19  KSKSLYQSNYQFKCLSLVYKNG*TENINMW 108
           + K+  Q+NY+F+   L  KN   EN N W
Sbjct: 179 QEKASLQTNYEFELQKLTQKNSILENNNTW 208


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 225 CELSSPKNVPTHKSKSNCPD 166
           C+ SS K+VP+   ++NCPD
Sbjct: 10  CDSSSIKHVPSTPLETNCPD 29


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 225 CELSSPKNVPTHKSKSNCPD 166
           C+ SS K+VP+   ++NCPD
Sbjct: 10  CDSSSIKHVPSTPLETNCPD 29


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 225 CELSSPKNVPTHKSKSNCPD 166
           C+ SS K+VP+   ++NCPD
Sbjct: 10  CDSSSIKHVPSTPLETNCPD 29


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 65  HLCIKMDKQKTLICGDVNGNFNALFTRVESIVKKSGQFDLLLCVGTFFGDDN 220
           H  +++   K+ +  +V+ N+    + V  I+K+SG  D + C G    D+N
Sbjct: 723 HYDVEISPAKSFL--EVHPNYLNKGSIVRRILKRSGSVDFVFCAGDDKTDEN 772


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 55  KCLSLVYKNG*TENINMWRCKWEFQCFV 138
           KC + + KNG   ++   +CK+EF C+V
Sbjct: 293 KCSTTIEKNGGCNHMTCKKCKYEF-CWV 319


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = +2

Query: 128 NALFTRVESIVKKSGQFDLLLCVGTFFGDDNSQLDAYKMGTRKVPVTTY---VFGPSNPD 298
           NA F    S   +S QFD  L VGT     +S  D+ K       +T +   V  P++ D
Sbjct: 209 NASFYNAISAATRSKQFDDHLFVGTCGIPTDSLPDSLKERISHDYITEHSSLVVYPTDTD 268

Query: 299 ---HVHHYCE 319
              H +HYC+
Sbjct: 269 FVGHYNHYCK 278


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 525 STPLNSLCPLKHASLTALQSLGS*VHIGTSLPSSRLDKPVKY 400
           STP  SL P  H S+T   S  S ++   S  SS +   +KY
Sbjct: 662 STPKASLSPRVHKSMTYSPSEASPLYANKSPKSSTMVPLMKY 703


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 293 DLMDQKHRLSLELSSFPFYMH-PVVNYHLQRMFQHIKANQT 174
           D  D    +  +    PF+    + N+HL++MF ++K ++T
Sbjct: 526 DFSDLTTTVLTQKQVIPFFSSMELANFHLKQMFGYVKQSKT 566


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 587 HLPSDIHPVVYPMAIM 540
           HLPSD+H + Y  AI+
Sbjct: 284 HLPSDVHSLDYERAIL 299


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 25/126 (19%), Positives = 45/126 (35%)
 Frame = +2

Query: 113 VNGNFNALFTRVESIVKKSGQFDLLLCVGTFFGDDNSQLDAYKMGTRKVPVTTYVFGPSN 292
           ++G    L  ++ +     G    +        D  S  D     TR  P+  +  G  +
Sbjct: 240 IDGKIQELVDKMNNYYNNDGASSWVFTADHGMSDFGSHGDGNLDNTR-TPIIAWGAGIQS 298

Query: 293 PDHVHHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSRRELGKDVPMCTYEPSDC 472
           P H  +Y  +   +  N+  + R  +        ++YL GL+       V     +  DC
Sbjct: 299 PTHEKNYGHDEYSLPWNLTEIKRIDIQQADIAALMSYLVGLNFPV--NSVGQIPLDYLDC 356

Query: 473 SAVRDA 490
           S+ R A
Sbjct: 357 SSRRKA 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,114
Number of Sequences: 5004
Number of extensions: 63596
Number of successful extensions: 211
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)