Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O11
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical ...   141   4e-34
U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat debr...    39   0.003
AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat debran...    39   0.003
Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical p...    30   1.6  
AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin monoox...    30   1.6  
AF022977-3|AAB88609.1|  554|Caenorhabditis elegans Hypothetical ...    29   3.8  

>AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical
           protein F17A9.2 protein.
          Length = 533

 Score =  141 bits (341), Expect = 4e-34
 Identities = 73/187 (39%), Positives = 107/187 (57%)
 Frame = +2

Query: 92  KTLICGDVNGNFNALFTRVESIVKKSGQFDLLLCVGTFFGDDNSQLDAYKMGTRKVPVTT 271
           K L CGDVNGNF  L  ++ +  KK+G FD L CVG FFGDD+   +    G  + P+ T
Sbjct: 7   KILCCGDVNGNFVELIKKISTTEKKNGPFDSLFCVGEFFGDDDDSNEKVINGNIEFPIPT 66

Query: 272 YVFGPSNPDHVHHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSRRELGKDVPMC 451
           Y+ GP+NP + + Y EE  E   N+ Y+G++GL NT++ ++IAYL+G+     G    + 
Sbjct: 67  YILGPANPRYSYLYPEESIEFSSNLTYLGKKGLLNTASGLQIAYLSGVE----GSSKDLS 122

Query: 452 TYEPSDCSAVRDACFRGQSEFRGVDVLITTLWPSGIQQDECQTVDVEQDRLSDLLSWLAI 631
            ++ +D   +       Q  F G D+L+T++WP+ I +         Q   S LLS LA 
Sbjct: 123 CFDKADVEELL-IPLGTQVGFSGTDILLTSVWPADIARHSHNQPSKPQPG-SVLLSKLAA 180

Query: 632 HIKPRYH 652
           H+KPRYH
Sbjct: 181 HLKPRYH 187


>U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat
           debranching enzyme protein.
          Length = 500

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
 Frame = +2

Query: 86  KQKTLICGDVNGNFNALFTRVESIVKKSG-QFDLLLCVGTF-----FGD----------- 214
           K +  + G  +G  +A++  +  I +K+G +FDLL+C G +     +GD           
Sbjct: 40  KIRIAVVGCSHGEMDAIYETMTLIEQKNGYKFDLLICCGDYQAVRNYGDLPHMSIPPKYR 99

Query: 215 DNSQLDAYKMGTRKVPVTTYVFGPSNPDHVHHYCE--EGSEIVPNVIYMGRRGLFNTSTD 388
                  Y  G +K PV T   G  N +   + CE   G  + PN+ YMG       + +
Sbjct: 100 SLQTFYKYYSGEQKAPVLTLFIG-GNHEASGYLCELPNGGWVAPNIYYMGFANCIRFA-N 157

Query: 389 VKIAYLTGL 415
           ++IA L+G+
Sbjct: 158 LRIAGLSGI 166


>AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat
           debranching enzyme relatedprotein 1 protein.
          Length = 500

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
 Frame = +2

Query: 86  KQKTLICGDVNGNFNALFTRVESIVKKSG-QFDLLLCVGTF-----FGD----------- 214
           K +  + G  +G  +A++  +  I +K+G +FDLL+C G +     +GD           
Sbjct: 40  KIRIAVVGCSHGEMDAIYETMTLIEQKNGYKFDLLICCGDYQAVRNYGDLPHMSIPPKYR 99

Query: 215 DNSQLDAYKMGTRKVPVTTYVFGPSNPDHVHHYCE--EGSEIVPNVIYMGRRGLFNTSTD 388
                  Y  G +K PV T   G  N +   + CE   G  + PN+ YMG       + +
Sbjct: 100 SLQTFYKYYSGEQKAPVLTLFIG-GNHEASGYLCELPNGGWVAPNIYYMGFANCIRFA-N 157

Query: 389 VKIAYLTGL 415
           ++IA L+G+
Sbjct: 158 LRIAGLSGI 166


>Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical
           protein F53F4.5 protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 137 FTRVESIVKKSGQF--DLLL-CVGTFFGDDNSQLDAYKMGTRKVPVTTYVFGPSNPDHV 304
           FT    IVK   +F  D+ L C G  FG      D  ++  ++VP+  YVF P N D V
Sbjct: 295 FTENSVIVKGGREFKCDIFLTCTGYTFGFPFVDSDIVEIKNQQVPLYKYVF-PPNSDSV 352


>AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 137 FTRVESIVKKSGQF--DLLL-CVGTFFGDDNSQLDAYKMGTRKVPVTTYVFGPSNPDHV 304
           FT    IVK   +F  D+ L C G  FG      D  ++  ++VP+  YVF P N D V
Sbjct: 295 FTENSVIVKGGREFKCDIFLTCTGYTFGFPFVDSDIVEIKNQQVPLYKYVF-PPNSDSV 352


>AF022977-3|AAB88609.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK994.1 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 541 CCYQYIYSSKFTLSSETCISDSTTVTGLISTHRNVF 434
           C Y  +YS+K+ + ++ C       +GL+ +H + F
Sbjct: 103 CLYINVYSNKYCIENKNCSVMVVVPSGLVQSHGSFF 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,814
Number of Sequences: 27780
Number of extensions: 350406
Number of successful extensions: 860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)