Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O08
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    37   0.002
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    30   0.33 
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    29   0.58 
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    29   0.77 
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   3.1  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   3.1  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    26   5.4  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   7.2  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
 Frame = +2

Query: 170 GKSIFITGATGFMGKVLVEKLLKSCPGLN-KLYLLMRPKKGQSSKERLDDFLGFKLFGPL 346
           G+   +TGATG+ G+  +E L+K    LN  +  L+R    +++KERL       L   L
Sbjct: 644 GQYFLLTGATGYFGRRFLEYLVK----LNISVVCLVRESSDEAAKERL-----ISLVPSL 694

Query: 347 QKENPKCFEKLHVVPGDILMDDLGISIADRELIQRECQVIFHCAACVRFDMFLRDAVNLN 526
           +  +    E + V    +     G+  A  E +      I+H AA V +    ++    N
Sbjct: 695 RISS----ENIIVWAAHVEEIRFGLDDAKWEFLVENVSRIYHMAAEVHWMKSYQELRPAN 750

Query: 527 TVATKRVLELA 559
            + TK VLEL+
Sbjct: 751 VLGTKTVLELS 761


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 167 AGKSIFITGATGFMGKVLVEKLLKS 241
           +GK + +TG TGF+G  + E+LL++
Sbjct: 2   SGKLVLVTGVTGFIGAHVAEQLLQA 26


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 179 IFITGATGFMGKVLVEKLLKS 241
           IF+TGA GF+G  +V +LL++
Sbjct: 3   IFVTGAAGFIGSEIVRQLLEA 23


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +2

Query: 251 LNKLYLLMRPKKGQSSKERLDDFLGFKLFGPLQKENPKCFEKLHVVPGDILMDDLGISIA 430
           L  L +++  KKG S+ +R+  FL       LQ+++P+  + +  +   IL    G+   
Sbjct: 38  LRALNIILTVKKGNSNADRVLRFL-VTFVNYLQQKDPE-IDIVQPILKHILR---GLDAK 92

Query: 431 DRELIQRECQVIFHCAACVR 490
           D+ +  R CQ+I     CV+
Sbjct: 93  DKTVRYRCCQIIARVVNCVK 112


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 456 HSRCISSLSAIDMPKSSISMSPGTT*SFSKHF 361
           HS   +SL A   P  S  + PG    + KHF
Sbjct: 669 HSSTPASLQATKTPSPSFVLEPGIPQEYKKHF 700


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -1

Query: 408 SISMSPGTT*SFSKHFGFSFCSGPNNLNPRKSSNLSLLLCPFLGLINR*SLFKPGHDFNS 229
           S+ +SP T+ +  + F FS    P +L P  SSN           +N  +L +P    NS
Sbjct: 319 SLPISPSTSQNSVQPFPFSIQQPPLHLEPPLSSN----------TLNSSTLPQP----NS 364

Query: 228 FSTNTFPMKPVAP-VMKIDLP 169
              NTFP  P  P +   D+P
Sbjct: 365 TDFNTFPPLPSTPRISSEDIP 385


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 610 AVGRRYVDEGLEVI-KVLGELQHSLCSYRVQIDGVTQKHIESY 485
           A+ RR+ D   +V+ K+L  L H       + D V ++++ESY
Sbjct: 298 AIQRRFGDTHSQVLDKLLITLDHDYIEKSTEKDKVLEENVESY 340


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 283 KRAKQ*REIRRLPRIQVIRAATKGKP----EVLRETSRCPGRHTDG*LGHINSRQR 438
           + AK+ RE++   R++  +   +GKP    E+LR+ S  P  +     G + S+ +
Sbjct: 91  EEAKRIREVKEKDRLESKKNERQGKPRSYNELLRQASSAPAVNETSSSGLLQSKDK 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,178
Number of Sequences: 5004
Number of extensions: 52512
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)