Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O07
         (327 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   1.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   3.3  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 142 PLDILDNPLRIFGDKPVSGALNTLGLRPARSVDHVEL 252
           P  ++ NPL    +KP   A+    LR A+ VD   L
Sbjct: 448 PQGVVLNPLDAICNKPRKDAVCVSQLRNAKKVDEAIL 484


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 148 DILDNPLRIFGDKPVSG 198
           ++L NP  +F D+P SG
Sbjct: 233 EVLTNPKLMFCDEPTSG 249


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 148 DILDNPLRIFGDKPVSG 198
           ++L NP  +F D+P SG
Sbjct: 233 EVLTNPKLMFCDEPTSG 249


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 190 VSGALNTLGLRPARSVDHVELVIH*ICNS 276
           +SG     GL+    V+H E V+H  C++
Sbjct: 283 LSGYHALSGLKAPPGVEHFEDVVHKKCSN 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,928
Number of Sequences: 336
Number of extensions: 1096
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)