Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O07
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    24   5.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     24   5.1  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    24   5.1  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    24   5.1  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    24   6.7  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    23   8.8  

>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 97  IPNILTSPLHVLTSKPLDILDNPLRIFGD 183
           IP   +SP++ LTS   D+ D P+ I GD
Sbjct: 404 IPFNGSSPIY-LTSGAWDVTDGPIHIDGD 431


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 39  LLVIIXRSLCLLCSIDFGAHS*YF 110
           LL I+  SLC+LC + F  +S YF
Sbjct: 550 LLKILFISLCILCLLQFIVYS-YF 572


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 128 TCNGLVKILGMSPEVNGAE*TKATPDNH 45
           TCNGL     +  ++ GA+     P +H
Sbjct: 789 TCNGLQHYAALGGDIEGAKQVNLWPSDH 816


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 109 LTSPLHVLTSKPLDILDNPLRIFGDKPVSG---ALNTLGLRP 225
           L  PL++   + + ++DNPL    D+ ++      NTL  RP
Sbjct: 388 LNIPLNIRPPQRIAVMDNPLVGISDEAIAAMKLPANTLSNRP 429


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +1

Query: 136 SKPLDILDNPLRIFGDKPVSGALNTLGLRPARSVDHVE 249
           S+P+++ +  L +  D P+     ++ ++P  S D V+
Sbjct: 227 SQPMELDEPELPVGSDAPIIDVEESIAMKPLMSHDQVD 264


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 40  CW*LSGVAFVYSAPLTSGLIPNILTSPLHVLTSKPLDIL 156
           CW LS    + S PLT   I +++ SP+  +++  + I+
Sbjct: 562 CWHLSAQTQLVSNPLTFRGIFSLVFSPILEISTGSISII 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,431
Number of Sequences: 5004
Number of extensions: 19106
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)