Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O07
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     27   4.6  
11_01_0167 - 1360166-1360369,1360747-1360823,1360911-1361534,136...    26   6.1  
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    26   6.1  
03_02_0582 + 9624481-9626844                                           26   6.1  
08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720...    26   8.0  

>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 205 LELH*QVYLRRFSKDYPVYLAVC*SIRAMGW 113
           L +H  V LRRF K+ P+Y  +   +   GW
Sbjct: 80  LFIHLFVLLRRFVKNEPLYTEIADGVYVGGW 110


>11_01_0167 -
           1360166-1360369,1360747-1360823,1360911-1361534,
           1361621-1361825
          Length = 369

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 94  LIPNILTSPLHVLTSKPLDILDNPLRIFGDKPVSGALNTLGL 219
           L+P +L   L ++ S P   L   L + GD   S A  TL L
Sbjct: 3   LLPLLLLLLLRIVASAPASPLATALFVLGDSTASCAATTLPL 44


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 144 RFASQYVQWAGQNIRNEPRSQWSRVNKGY 58
           RF S+  + AG  +++EP++   +V KG+
Sbjct: 559 RFKSRAFRRAGMRVKHEPKAALVKVTKGH 587


>03_02_0582 + 9624481-9626844
          Length = 787

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 145 LDILDNPLRIFGDKPVSGALNT 210
           +DI+ NP+ +F D+P SG  +T
Sbjct: 294 VDIIHNPIMLFLDEPTSGLDST 315


>08_02_0493 -
           17770723-17770758,17770772-17770996,17771051-17772033,
           17772196-17772720,17772801-17772990
          Length = 652

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 117 AGQNIRNEPRSQWSRVNKGYAX*SPTIS 34
           AGQ I++EPR+   +V+KG    +  IS
Sbjct: 251 AGQKIKHEPRAALIKVSKGQMTVNAVIS 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,964,023
Number of Sequences: 37544
Number of extensions: 115013
Number of successful extensions: 219
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)