Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O07
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 133 TSKPLDILDNP 165
           TSKPL ++DNP
Sbjct: 305 TSKPLPMVDNP 315


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 5   SLGHHGAHTPDIV 43
           S+ H GAH  DIV
Sbjct: 208 SMRHRGAHITDIV 220


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 106 ILTSPLHVLTSKPL 147
           I+T+PLHV  + PL
Sbjct: 326 IVTAPLHVEVTPPL 339


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 106 ILTSPLHVLTSKPL 147
           I+T+PLHV  + PL
Sbjct: 326 IVTAPLHVEVTPPL 339


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 64  FVYSAPLTSGLIPNILTSPLHVLTSKPLDI 153
           ++++     G +  IL +P    T+KP+DI
Sbjct: 552 WIFTVACVLGTVLIILQAPSLYDTTKPIDI 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,856
Number of Sequences: 438
Number of extensions: 1174
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)