Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O02
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    24   1.2  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   3.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.7  

>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -3

Query: 253 WNAF-FAAATAKSISALSPSATCVMTVSSCGLMVGKVFLLTASTHSLLINSLVYLTSTFT 77
           W +F F  A      A      C++  +  GLM+ K  +  ++    +       T +F 
Sbjct: 63  WKSFRFVYAVYNIFGAFVMGLFCILKFALDGLMLDKTGICVSNVFDFVHFYYPVATMSFY 122

Query: 76  MLMIFLLIQSLSVS 35
           +L  F  IQ + +S
Sbjct: 123 VLNFFGSIQFIIIS 136


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 389 NPKKKYTFPQACSDITL 439
           NP K  T PQ CS + L
Sbjct: 349 NPHKLLTAPQQCSTLLL 365


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 547 YPIPMMSWKIAPALAAGCTVVLKP 618
           +P P+++WK A  ++ G     KP
Sbjct: 725 FPRPVVTWKRATGVSPGDYKDFKP 748


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,602
Number of Sequences: 336
Number of extensions: 3550
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)