Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_O01
(543 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 238 5e-62
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 227 1e-58
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 206 3e-52
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 193 2e-48
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 165 4e-40
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 160 2e-38
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 154 1e-36
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 145 5e-34
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 119 2e-33
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 136 2e-31
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 134 9e-31
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 122 4e-27
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 117 2e-25
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 95 9e-19
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 94 2e-18
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 90 3e-17
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 89 8e-17
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 85 1e-15
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 83 4e-15
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 80 3e-14
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 79 5e-14
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 77 3e-13
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 76 6e-13
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 73 6e-12
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 72 8e-12
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 71 1e-11
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 70 3e-11
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 67 3e-10
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 66 5e-10
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 64 2e-09
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 62 8e-09
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 61 1e-08
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 61 1e-08
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 59 7e-08
UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal ... 50 3e-05
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 48 1e-04
UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large rib... 48 2e-04
UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32; Bacter... 46 4e-04
UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12; Bacter... 45 0.001
UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3; Bacteri... 43 0.005
UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;... 42 0.007
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 41 0.021
UniRef50_Q7XYN9 Cluster: Ribosomal protein rpL13; n=1; Bigelowie... 41 0.021
UniRef50_Q6G3I6 Cluster: 50S ribosomal protein L13; n=33; Bacter... 40 0.028
UniRef50_Q2IA19 Cluster: Chloroplast 50S ribosomal protein L13; ... 40 0.049
UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42; Lactob... 39 0.065
UniRef50_Q67JX6 Cluster: 50S ribosomal protein L13; n=59; Bacter... 39 0.065
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 39 0.086
UniRef50_Q1IU84 Cluster: 50S ribosomal protein L13; n=17; Bacter... 38 0.15
UniRef50_Q12487 Cluster: 54S ribosomal protein L23, mitochondria... 37 0.26
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 36 0.46
UniRef50_Q82UK0 Cluster: 50S ribosomal protein L13; n=30; Bacter... 36 0.46
UniRef50_Q9SYL9 Cluster: 50S ribosomal protein L13, chloroplast ... 35 1.1
UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1; Tr... 35 1.4
UniRef50_O46915 Cluster: Chloroplast 50S ribosomal protein L13; ... 35 1.4
UniRef50_O84127 Cluster: 50S ribosomal protein L13; n=7; Chlamyd... 34 1.8
UniRef50_Q7WFC3 Cluster: 50S ribosomal protein L13; n=265; Bacte... 34 2.4
UniRef50_Q8KTT2 Cluster: 50S ribosomal protein L13; n=1; Candida... 33 3.2
UniRef50_A4S143 Cluster: Predicted protein; n=2; Ostreococcus|Re... 33 3.2
UniRef50_Q54I73 Cluster: Putative uncharacterized protein; n=1; ... 33 5.6
UniRef50_Q9RXY1 Cluster: 50S ribosomal protein L13; n=6; Bacteri... 33 5.6
UniRef50_UPI0000E4735E Cluster: PREDICTED: similar to pats1; n=2... 32 7.4
UniRef50_UPI00003C0D3F Cluster: PREDICTED: similar to CG9186-PB,... 32 7.4
UniRef50_Q6YR78 Cluster: 50S ribosomal protein L13; n=2; Candida... 32 7.4
UniRef50_O51314 Cluster: 50S ribosomal protein L13; n=3; Borreli... 32 7.4
UniRef50_A3CKB0 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 238 bits (583), Expect = 5e-62
Identities = 103/160 (64%), Positives = 127/160 (79%)
Frame = +1
Query: 43 LAIKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKR 222
L+ K I+IDGRGHLLGRLA+VIAK +L G KVVVVRCE + +SG+FF+NK+K +++LRKR
Sbjct: 4 LSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYLRKR 63
Query: 223 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 402
CNVNPARGPFHFRAPS++LWK VRGM+PHKT+RG NAL+RL+ Y+G P PFD
Sbjct: 64 CNVNPARGPFHFRAPSRMLWKAVRGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKRLCVP 123
Query: 403 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
CL+P R +C VGR++HE+GWKYRDVV LE KRK
Sbjct: 124 TAMRQLCLRPDRKFCDVGRVAHEVGWKYRDVVNNLEAKRK 163
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 227 bits (556), Expect = 1e-58
Identities = 99/163 (60%), Positives = 125/163 (76%)
Frame = +1
Query: 43 LAIKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKR 222
L + +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F++NK+K +++LRKR
Sbjct: 4 LTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKR 63
Query: 223 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 402
CNVNPARGPFHFRAPS+I +K VRGMIPHKT+RG+ AL RLR +DG P P+D
Sbjct: 64 CNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVP 123
Query: 403 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGXL 531
L+ R YC VGRLSHE+GW Y+DV++ LE KRK L
Sbjct: 124 IAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKL 166
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 206 bits (503), Expect = 3e-52
Identities = 90/157 (57%), Positives = 117/157 (74%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNV 231
K +V+D RGHLLGRLAA +AK LL G +VV VR E+INISG+ F+NKLK +FL+KR N
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 232 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 411
NP RGPFHFR+P++ILW+T+RGMIPHKT RG AL RL+ ++G PPP+D
Sbjct: 64 NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123
Query: 412 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
LKPGR +C +GRL+ E+GW++ D+V +LE+KRK
Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRK 160
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 193 bits (471), Expect = 2e-48
Identities = 83/160 (51%), Positives = 113/160 (70%)
Frame = +1
Query: 43 LAIKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKR 222
++ + IV+D R H+LGRL++++AK LL G +VVVVRCE+I +SG + K+K + FLRKR
Sbjct: 7 ISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLRKR 66
Query: 223 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 402
N P+ GP HFRAPSKILW+T+RGMIPHKT+RG AL RL+ Y+G PPP+D
Sbjct: 67 MNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPPPYDKIKRMVIP 126
Query: 403 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
L+ G YC +G+LS E+GW + D +++LEDKRK
Sbjct: 127 DALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELEDKRK 166
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 165 bits (402), Expect = 4e-40
Identities = 77/162 (47%), Positives = 104/162 (64%)
Frame = +1
Query: 37 RALAIKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLR 216
R + K +VID +GHLLGRLA+ +AK LL G ++VVVR E INISG+ F+N++K FL
Sbjct: 71 RKMFDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLN 130
Query: 217 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXX 396
K N NP RG HFRAPS+I W+ VRGM+PHKT +G AL RL+ ++G P P+D
Sbjct: 131 KWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQV 190
Query: 397 XXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
L+ R C +G LS +GW + ++ KLE+KR+
Sbjct: 191 VVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRR 232
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 160 bits (388), Expect = 2e-38
Identities = 75/154 (48%), Positives = 101/154 (65%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
IVID +GH+LGRL+A++AK LL G++V +VRCE+ ISG F K + + KR N N
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNH 63
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 417
RGPFHFRAP++I+ +T+RGMIP+KT RG +A+ RLR YDG PP
Sbjct: 64 LRGPFHFRAPAEIVRRTIRGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKRVVCPSAMAY 123
Query: 418 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKR 519
CL+P R C VGR++HEIGW++ V + E +R
Sbjct: 124 LCLRPERRRCEVGRVAHEIGWQHAADVERYEKRR 157
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 154 bits (373), Expect = 1e-36
Identities = 68/157 (43%), Positives = 97/157 (61%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNV 231
K IVID +GHL GRLA++++K LL+G VVVVR E I +SG + ++ + KR N
Sbjct: 3 KVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMNT 62
Query: 232 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 411
NP +GP+H+ +PS++ WKTVRGM+PHKT RG A R + Y+G P P+D
Sbjct: 63 NPKKGPYHYTSPSRLFWKTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVKRAVVPEAL 122
Query: 412 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
L G +C +G +IGWK+ +V++LE KR+
Sbjct: 123 KVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELEAKRQ 159
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 145 bits (352), Expect = 5e-34
Identities = 72/155 (46%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
IVID + H+LGR AAV+AK LL G K+ VVRCEQ+NI+G +NK+K + +LRKR NP
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNP 84
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX-XXXX 414
+GPFH RAPS + +TVR M+P T+RG AL L Y+G PP
Sbjct: 85 TKGPFHHRAPSDVFVRTVRSMLPRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQR 144
Query: 415 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKR 519
C + R Y +G + +GWKY DVV LE R
Sbjct: 145 HVCYRSERPYTVLGNMCKHVGWKYSDVVANLEKAR 179
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 119 bits (286), Expect(2) = 2e-33
Identities = 55/88 (62%), Positives = 70/88 (79%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNV 231
+ +V+ GRGHLLG LAA +AK +L G KVVVV E INISGNF++NKLK ++FL K+ N
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNT 63
Query: 232 NPARGPFHFRAPSKILWKTVRGMIPHKT 315
NP+RGP+ F+APS+I W T RGM+PHKT
Sbjct: 64 NPSRGPYRFQAPSRIFWWTARGMLPHKT 91
Score = 46.0 bits (104), Expect(2) = 2e-33
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +1
Query: 424 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
LKP R + ++GRL+H++GWKY+ V LE+ RK
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRK 130
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 136 bits (330), Expect = 2e-31
Identities = 70/155 (45%), Positives = 92/155 (59%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
IVID +GH+ GRLAA +AK LL+G KVVVVRCE+I ++G FL K N NP
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNP 64
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 417
GPFH RAP +I + VRGMIP+KT RG +A L+ Y+G P + +
Sbjct: 65 RDGPFHQRAPHEIFARAVRGMIPYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRC 124
Query: 418 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
+ R +GRLS +GWKY +VV +LE++RK
Sbjct: 125 VSIHTDRPTTKLGRLSTTMGWKYGNVVAQLEEQRK 159
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 134 bits (325), Expect = 9e-31
Identities = 59/156 (37%), Positives = 96/156 (61%)
Frame = +1
Query: 49 IKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCN 228
+K V+D + HLLGR+A++ AK +L+G+K++++R E +I+G +N K S +K+ N
Sbjct: 1 MKIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTN 60
Query: 229 VNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 408
NP RGPFHF++PSKIL++T++ MIPHKT RG AL+ L+ ++G P F
Sbjct: 61 TNPRRGPFHFKSPSKILYQTIKRMIPHKTMRGSKALKNLKIFEGLPRIFSKIKKEKFFEA 120
Query: 409 XXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDK 516
+K R ++G++ +GWK R + + D+
Sbjct: 121 FRYKVIKNYRKTVNLGKVCEVLGWKNRKFIEQKSDQ 156
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 122 bits (295), Expect = 4e-27
Identities = 63/148 (42%), Positives = 83/148 (56%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
+V+D R H+L RLA++IAK LL G +VV R N P
Sbjct: 12 VVVDARHHMLSRLASIIAKELLNGKRVV--------------------------RMNTKP 45
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 417
+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 46 SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKV 105
Query: 418 FCLKPGRNYCHVGRLSHEIGWKYRDVVR 501
L+PG YC +G+LS E+GW Y D +R
Sbjct: 106 LRLQPGHKYCLLGQLSKEVGWNYYDTIR 133
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 117 bits (281), Expect = 2e-25
Identities = 61/155 (39%), Positives = 84/155 (54%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
++ID G + G+LAA +AK+LLEG +V VV E+ G+ + K +L KRC VNP
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNP 66
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 417
RGPFHFR P L K +R MI +K RGK A+ RL TY+G P +
Sbjct: 67 RRGPFHFREPRMHLAKIIRRMISYKKPRGKAAMSRLATYEGIPRELEGQPRYKVTCAFVK 126
Query: 418 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
+ P R Y +G+L GWK+ + + L D+ K
Sbjct: 127 YTGNPNR-YVTLGKLLSMFGWKHAEAAKSLTDELK 160
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 95.1 bits (226), Expect = 9e-19
Identities = 48/140 (34%), Positives = 72/140 (51%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNPA 240
++D H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG + FL+ ++P
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPE 60
Query: 241 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXF 420
GP+H R P I+ + +RGM+P K GK A RLR Y G P +
Sbjct: 61 HGPYHPRRPDTIMTRMIRGMLPRKKPSGKAAHSRLRAYIGSPGHLKSFEKRKLKGAEIT- 119
Query: 421 CLKPGRNYCHVGRLSHEIGW 480
+P NY + L +GW
Sbjct: 120 --RPTANYTTMADLGETVGW 137
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 93.9 bits (223), Expect = 2e-18
Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN--FFKNKLKLMSFLRKRCNVN 234
+I+ G +LGRLA+ +AK+LLEG +VV+V E+ I+GN +K K + LR N
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTL--TN 60
Query: 235 PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 414
P RGPF+ + +I+ +T+RGM+P KT+RG+ A RRL+ Y G P F +
Sbjct: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV 120
Query: 415 XFCLKPGRNYCHVGRLSHEIGWKY 486
+P Y VG ++ +G K+
Sbjct: 121 SRLSRP--KYVTVGEVAKFLGGKF 142
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 90.2 bits (214), Expect = 3e-17
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNV 231
+ IV+D H+ GRL++ +AK+L +G++V +V CE+I SG + FL +
Sbjct: 12 RPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINSII 71
Query: 232 NPARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 408
NP GP H+R P I+ K +R M+P+ + GK +++RLR Y G P +
Sbjct: 72 NPKHGPVHYRRPDTIITKMIRQMLPYDRKPSGKESIKRLRAYIGSPKELKSLEKIQFEKA 131
Query: 409 XXXFCLKPGRNYCHVGRLSHEIGW 480
K NY +G L IGW
Sbjct: 132 KIK---KSPSNYTTMGELCRVIGW 152
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 88.6 bits (210), Expect = 8e-17
Identities = 51/141 (36%), Positives = 77/141 (54%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNPA 240
VID +LGRLA+V+AK +L+G ++ V+ E+ I+G KN +K +L+K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPK 73
Query: 241 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXF 420
+GPF+ R P I + VRGM+P KT+RG+ A +RLR Y G P +
Sbjct: 74 KGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADM 133
Query: 421 CLKPGRNYCHVGRLSHEIGWK 483
Y +G LS E+G++
Sbjct: 134 SRLGHLWYVTLGELSEELGYQ 154
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 85.0 bits (201), Expect = 1e-15
Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLK-LMSFLRKRCN 228
+AIVIDG GH+ GRLA+V+AK LL+G++VVVV E+I I+G + K L ++ +
Sbjct: 6 EAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRWVEWKTY 65
Query: 229 VNP-ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 381
NP RGP + + P ++ + VRGM+P + G+++L+RL Y G P + N
Sbjct: 66 YNPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGRDSLKRLTVYVGLPDEYRN 117
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 83.0 bits (196), Expect = 4e-15
Identities = 43/102 (42%), Positives = 64/102 (62%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNPA 240
VID GH+LGRL++ IAK LL G ++VVV E+ I+G+ + + + K +
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKE 74
Query: 241 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 366
+GP+ R P +I +TVRGM+P K+ RG++A RRLR + G P
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 80.2 bits (189), Expect = 3e-14
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
VID +G +LGRLA+ +AK LL G+ KV ++ E+ ISG+ L + R
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGAT 59
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 417
GP+ + P +IL +T+RGM+P+K RG++A+ RL+ Y G P++
Sbjct: 60 EFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADAD 117
Query: 418 FCLKPGRNYCHVGRLSHEIGWKY 486
L Y +G +S ++G K+
Sbjct: 118 MRLLSSNKYVELGEVSQKMGSKF 140
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 79.4 bits (187), Expect = 5e-14
Identities = 36/78 (46%), Positives = 52/78 (66%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNV 231
K VID GH+LGR+A+V+AK LL G K+V+VRCE + + G ++ + RKR N
Sbjct: 10 KVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRVNT 69
Query: 232 NPARGPFHFRAPSKILWK 285
NP RG FH R+P++++ K
Sbjct: 70 NPTRGAFHHRSPAEMVRK 87
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 76.6 bits (180), Expect = 3e-13
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGNFFKNKLKLMSFLRK---- 219
+++D GH+ GRLA IAK LLE ++VVV E++ I+G+ K+ + F RK
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEW 75
Query: 220 RCNVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 366
R + NP + GP R P ++ + VRGM+P K+E G++AL+RLR Y P
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 75.8 bits (178), Expect = 6e-13
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN-FFKNKLKLMSFLRKRCN 228
+ IV+DG G ++GRLA+V+AK+LL G +V VV E+I +SG+ + + L + +
Sbjct: 9 REIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTVLGVKSH 68
Query: 229 VNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 408
+ P R P ++ VRGM+P RG+ AL RLR Y G P D
Sbjct: 69 FSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVP---DELKGREFVRF 125
Query: 409 XXXFCLKPGRNYCHVGRLSHEIGWK 483
+ +Y +G ++ ++GWK
Sbjct: 126 PEADASRLSSHYIELGAVARQLGWK 150
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 72.5 bits (170), Expect = 6e-12
Identities = 36/103 (34%), Positives = 60/103 (58%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
+V+D R +LGR+++ +A+ +L+G V VV E+ I+GN + M R +
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITGN----EEATMETYHTRAELGS 65
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 366
GP++ + P +I + +RGM+P+KTE G+ AL +R Y G P
Sbjct: 66 DSGPYYPKRPDRIFKRAIRGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 72.1 bits (169), Expect = 8e-12
Identities = 37/103 (35%), Positives = 63/103 (61%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
++ D G +LGRLA+++A+ L G +V +V E+ I+G+ N +K +L+K +
Sbjct: 7 LIYDAEGLVLGRLASIVARNLKRGYRVKIVNAEKAIITGD--PNMVK-KEWLQKVKRGDY 63
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 366
+GPF+ + P IL + +RGM+P KT RG+ L+ ++ Y G P
Sbjct: 64 YKGPFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVP 106
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 71.3 bits (167), Expect = 1e-11
Identities = 39/146 (26%), Positives = 69/146 (47%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNV 231
K IVIDGR L+GRLA+ I +L +G + V+RC+ + SG + +++ +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRT 62
Query: 232 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 411
NP +GP+ F PS +L K V+GM+ + + + ++ P +
Sbjct: 63 NPNKGPYFFSNPSSLLKKIVKGMLNKLNKSHTLLFKSVECFNDTPNRYIYNYKLFLKNSH 122
Query: 412 XXFCLKPGRNYCHVGRLSHEIGWKYR 489
+ LKP + + + + GW+ R
Sbjct: 123 KNYKLKPDSKFTKLYEILPKFGWQDR 148
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 70.1 bits (164), Expect = 3e-11
Identities = 34/103 (33%), Positives = 60/103 (58%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
+++D R ++GR+A+ +A+ L+G V VV E+ I+G + +++ KR ++
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGR----EEQIVEKYEKRVDIGN 65
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 366
G F+ + P I +T+RGM+PHK +RG+ A +R Y G P
Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 66.9 bits (156), Expect = 3e-10
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKL--KLMSFLRKRC 225
+ ++I+ G +LGR+A+ + ++L EG KV++V E+ ISG KN++ L +
Sbjct: 8 QVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGE--KNRVIESYKLLLTVKT 65
Query: 226 NVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 402
NP R G R+P I+ +T+RGM+P K+ +G+ L+ ++ Y G P F+
Sbjct: 66 LFNPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFP 124
Query: 403 XXXXXFCLKPGRNYCHVGRLSHEIGW 480
LK G+ Y V +S E+GW
Sbjct: 125 DSDVS-RLK-GK-YVTVEVVSKELGW 147
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 66.1 bits (154), Expect = 5e-10
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +1
Query: 421 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR+
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQ 37
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 64.1 bits (149), Expect = 2e-09
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
+V++ ++GRLA+ +AK+ L G ++ VV E+ ++GN K + ++ NP
Sbjct: 2 VVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNP 61
Query: 238 AR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 366
+ GP + R P I+ + +RGM+P+K RG A ++++ G P
Sbjct: 62 KKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVP 105
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 62.1 bits (144), Expect = 8e-09
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLL----EGN--KVVVVRCEQINISGNFFKNKLKLMSFLRK 219
+V D +LGRLA+ IAK LL EG+ +V+++ E ++G K+++ L + RK
Sbjct: 7 LVFDAHDKVLGRLASHIAKTLLVTRREGDPKRVIIINAEMAIVTGP--KDRI-LADYDRK 63
Query: 220 RCNVNPARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLRTYDGCP 366
+P +GPF R P IL +TVRGM+P+ K G+ A++ LR G P
Sbjct: 64 YKLNHPRKGPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIGTP 113
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 61.3 bits (142), Expect = 1e-08
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +1
Query: 82 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNPARGPFHF 258
+LGRLA+++AK L + +VRCE+I ISG + K+K M FLR+R N P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITF 59
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 61.3 bits (142), Expect = 1e-08
Identities = 31/108 (28%), Positives = 55/108 (50%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
I ID H+ GRL++ +AK LL G + +V ++ I+G + + + F R +
Sbjct: 2 IYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITG---RKEFIIDKFNNLRNTGSI 58
Query: 238 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 381
+GP++ + +IL +++ M+P K G AL+R Y P +N
Sbjct: 59 RKGPYYPKTADRILKRSIGDMLPKKKTHGMEALKRCMVYANVPKSLEN 106
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 58.8 bits (136), Expect = 7e-08
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKRCNVNP 237
+++D +LGR++ IAK+L G KV VV E+ ISG + + NP
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNP 67
Query: 238 AR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 366
R G R P I+ +TVRGM+P K + GK R L+ Y G P
Sbjct: 68 YRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIP 110
>UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal
protein L13a; n=2; Bos taurus|Rep: PREDICTED: similar to
ribosomal protein L13a - Bos taurus
Length = 112
Score = 50.4 bits (115), Expect = 3e-05
Identities = 28/106 (26%), Positives = 45/106 (42%)
Frame = +1
Query: 202 MSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 381
+ + + NP+ GPF F P I TV+ ++P+K + + L L+ +D +
Sbjct: 6 LDLFHRPLDTNPSNGPFQFWVPKHIFRHTVQDLLPYKIKHDQETLEHLKVFDKTKQMIIS 65
Query: 382 XXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKR 519
CL G L++E GWKY+ V LE K+
Sbjct: 66 VQICVSEATSRFACL---------GYLTYESGWKYQVVTNTLEKKK 102
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 48.0 bits (109), Expect = 1e-04
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +1
Query: 319 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 471
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large
ribosomal subunit; n=2; Ostreococcus|Rep: Plastid
ribosomal protein L13 large ribosomal subunit -
Ostreococcus lucimarinus CCE9901
Length = 218
Score = 47.6 bits (108), Expect = 2e-04
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGN------------KVVVVRCEQINISGNFFKNKLKL 201
+VID G LGRL+ V A L GN VVV+ ++I ++GN KL
Sbjct: 75 VVIDAAGLRLGRLSTVAATYLRGGNSGCYTPAFNMGVNVVVINADKIVVTGNKANQKLYY 134
Query: 202 MSFLRKR--CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 372
+R + H R P++++ K ++GM+P K G+ L+ Y G P
Sbjct: 135 TLGVRGKPGSMKEETYASLHARQPARVIEKAIKGMLP-KNRMGRETFTHLKVYAGADHP 192
>UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32;
Bacteria|Rep: 50S ribosomal protein L13 -
Prochlorococcus marinus (strain MIT 9313)
Length = 150
Score = 46.4 bits (105), Expect = 4e-04
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFKNKLKLM 204
++D LGRLA +A VL NK VVVV ++I +SGN KL
Sbjct: 18 LVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRR 77
Query: 205 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 372
R R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 78 HSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNA-LGRQLFRKLKVYRGPEHP 132
>UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12;
Bacteria|Rep: 50S ribosomal protein L13 - Synechococcus
sp. (strain CC9902)
Length = 150
Score = 44.8 bits (101), Expect = 0.001
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFKNKLKLM 204
V+D LGRLA +A +L G+ VVVV E+I +SG + KL
Sbjct: 18 VVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQKLYRR 77
Query: 205 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 372
R R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 78 HSGRPGGMKVETFESLQERIPERIVEKAIKGMLPHNA-LGRQMYRKLKVYKGTEHP 132
>UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3;
Bacteria|Rep: 50S ribosomal protein L13 - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 143
Score = 42.7 bits (96), Expect = 0.005
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFKNKL 195
K VID G LGRLAA I+++L NK VVVV +++ ++G + K+
Sbjct: 14 KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73
Query: 196 -----KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 360
LR+R R + P +IL + VRGM+P KT + L++LR Y G
Sbjct: 74 YRWHTGYPGGLRERSYRQMLR-----KRPEEILRQAVRGMMP-KTRLARRQLKKLRIYAG 127
Query: 361 CPPP 372
P
Sbjct: 128 PEHP 131
>UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;
n=1; Cyanidium caldarium|Rep: Putative uncharacterized
protein rpl13 - Cyanidium caldarium
Length = 143
Score = 42.3 bits (95), Expect = 0.007
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Frame = +1
Query: 43 LAIKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKR 222
+A KA +I L+G+ + + + N V+++ Q+ I+GN KN K+ +
Sbjct: 29 IATKAAII-----LMGKNRSTYSYNSMSANFVIIINSRQVAITGN--KNTQKVYKRYSAK 81
Query: 223 CNVNPARGPFHF--RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 372
+H R P++IL + V+GM+P K+ GK L+ Y G P
Sbjct: 82 PGATKTESFYHLKKRIPNRILEQAVKGMLP-KSVLGKKMFSHLKVYAGDSHP 132
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 40.7 bits (91), Expect = 0.021
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLLEGNK--VVVVRCEQINISGNFFKNKLKLMSFLRKRCNV 231
++I+ + +LGRLA+ + K LL + + +V+ QI ++GN +KNK S+ R
Sbjct: 1 MLINAKDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNK----SYRRHSGRP 56
Query: 232 NPARGPFHFRAPSK-ILWKTVRGMIPHKTERGKNALRRLR 348
+ + ++ K L ++GM+P K +G+ R++R
Sbjct: 57 GGMKIRYFYQIGGKRALEHAIKGMLP-KGVKGRQLWRKIR 95
>UniRef50_Q7XYN9 Cluster: Ribosomal protein rpL13; n=1; Bigelowiella
natans|Rep: Ribosomal protein rpL13 - Bigelowiella
natans (Pedinomonas minutissima) (Chlorarachnion
sp.(strain CCMP 621))
Length = 273
Score = 40.7 bits (91), Expect = 0.021
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFKNKL-K 198
IV+D + +LGRLA++ A +++ G VV++ +++ ++G + +KL K
Sbjct: 127 IVLDAQDQILGRLASLAATLVMGKWHPLYHPAMNMGAHVVIINADKVRVTGRKYTDKLYK 186
Query: 199 LMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 372
R + A R P +I+ ++GM+P KT G+ ++L Y G P
Sbjct: 187 RHVTGRPGSMKSEAFRDLQARIPERIVEVAIKGMLP-KTRLGREQFKQLHIYAGDENP 243
>UniRef50_Q6G3I6 Cluster: 50S ribosomal protein L13; n=33;
Bacteria|Rep: 50S ribosomal protein L13 - Bartonella
henselae (Rochalimaea henselae)
Length = 154
Score = 40.3 bits (90), Expect = 0.028
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFKNK- 192
K ++ID +LGRLAA +A L +G+ V+V+ ++I+++G + +K
Sbjct: 14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKISLTGKKYTDKK 73
Query: 193 ----LKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 360
+ ++KR AR R P +++ K V MIP + G+ L+ LR Y G
Sbjct: 74 YYWHTGYIGGIKKR----TARQILEGRFPERVVEKAVERMIP-RGPLGRRQLKNLRVYAG 128
Query: 361 CPPP 372
P
Sbjct: 129 SQHP 132
>UniRef50_Q2IA19 Cluster: Chloroplast 50S ribosomal protein L13;
n=1; Pavlova lutheri|Rep: Chloroplast 50S ribosomal
protein L13 - Pavlova lutherii (Monochrysis lutheri)
Length = 225
Score = 39.5 bits (88), Expect = 0.049
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFKNKLKLM 204
VID G LGR+A IAK L+ G+ V+V+ +++ ISG F K
Sbjct: 73 VIDAEGMRLGRMATEIAKRLMGKHKVTFFPGSNMGDYVIVINADKVVISGAKFYQKEYFR 132
Query: 205 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 360
R + R P +I+ K V+GM+P K G+ R L+ + G
Sbjct: 133 HSGRPGGVTVESFEQLQARIPERIVEKAVKGMLP-KGPLGREQFRHLKVFAG 183
>UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42;
Lactobacillales|Rep: 50S ribosomal protein L13 -
Streptococcus mutans
Length = 148
Score = 39.1 bits (87), Expect = 0.065
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFKNKL 195
K ++D LGRL+AV+A VL NK V+V+ E++ ++G NK+
Sbjct: 16 KWYIVDATDVPLGRLSAVVASVLRGKNKPTFTPHTDTGDFVIVINAEKVKLTGKKAANKI 75
Query: 196 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 360
+ + G + +++ K+V+GM+PH T G+ +L+ + G
Sbjct: 76 YYTHSMYPGGLKQISAGELRSKNAVRLIEKSVKGMLPHNT-LGRAQGMKLKVFVG 129
>UniRef50_Q67JX6 Cluster: 50S ribosomal protein L13; n=59;
Bacteria|Rep: 50S ribosomal protein L13 -
Symbiobacterium thermophilum
Length = 143
Score = 39.1 bits (87), Expect = 0.065
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLE------------GNKVVVVRCEQINISGNFFKNKL 195
K V+D G LGRLA+ +A +L G+ V++V E+I ++G +K+
Sbjct: 15 KWYVVDAEGKTLGRLASKVAAILRGKHKPTFTPHVDCGDFVIIVNAEKIQVTGKKVTDKV 74
Query: 196 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 372
R P ++L ++GM+PH G+ R+L+ Y G P
Sbjct: 75 YYRHSGYPGGQKATTFEQMIARRPERVLELAIKGMLPH-NRLGRQMYRKLKVYAGPEHP 132
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 38.7 bits (86), Expect = 0.086
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = -2
Query: 341 LLRAFLPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEML 162
+LR F R+ L FHR L+W+ R+G + + + +S S F+KK+P
Sbjct: 1 MLRYFSQRNSLAACSSSGCFHR-----LEWRACRSGESPYKFQSLSVSRSKFIKKVPSGR 55
Query: 161 ICSQRTTTTLFPSRR 117
+ SQ T+ P RR
Sbjct: 56 VISQSTSAFWLPFRR 70
>UniRef50_Q1IU84 Cluster: 50S ribosomal protein L13; n=17;
Bacteria|Rep: 50S ribosomal protein L13 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 37.9 bits (84), Expect = 0.15
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Frame = +1
Query: 43 LAIKAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFK 186
+A K V+D G LGRLA+ +A++L G+ VVV+ E+I I+G
Sbjct: 10 VARKWFVVDADGQTLGRLASRVARILSGKDNPKYTPFIDTGDHVVVINAEKIKITGLKAD 69
Query: 187 NKLKLMSFLRKRCNVNPARGPFHF-RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 363
NK K + + R P IL ++GM+P K++ GK +L+ Y G
Sbjct: 70 NK-KYYHYSGYPGGMKEEEFLKRLERRPELILETAIKGMLP-KSKLGKAMGGKLKVYRGA 127
Query: 364 PPP 372
P
Sbjct: 128 DHP 130
>UniRef50_Q12487 Cluster: 54S ribosomal protein L23, mitochondrial
precursor; n=12; Saccharomycetales|Rep: 54S ribosomal
protein L23, mitochondrial precursor - Saccharomyces
cerevisiae (Baker's yeast)
Length = 163
Score = 37.1 bits (82), Expect = 0.26
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 127 GNKVVVVRCEQINISGNFFKNKLKLMSFLRK-RCNVNPARGPFHFRAPSKILWKTVRGMI 303
G+ VVV C++I ++G F+ K R + + + +IL K V GM+
Sbjct: 54 GDYVVVTNCQKIRVTGKKFEQKTYWSHSGRPGQLKLQTMNKVVADKGFGEILKKAVSGML 113
Query: 304 PHKTERGKNALRRLRTYDGCPPPF 375
P K + K L RL+ +DG P+
Sbjct: 114 P-KNKLRKQRLDRLKVFDGSENPY 136
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 36.3 bits (80), Expect = 0.46
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +1
Query: 463 SHEIGWKYRDVVRKLEDKRK 522
+HE+GW+Y+ +V KLE+KRK
Sbjct: 1 AHEVGWQYQGIVEKLEEKRK 20
>UniRef50_Q82UK0 Cluster: 50S ribosomal protein L13; n=30;
Bacteria|Rep: 50S ribosomal protein L13 - Nitrosomonas
europaea
Length = 144
Score = 36.3 bits (80), Expect = 0.46
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFKNKLKLM 204
V+D +LGRLAA IA L G+ +VV+ +++ ++GN ++K
Sbjct: 17 VVDATDKVLGRLAAAIAHRLRGKHKPIYTPHVDTGDYIVVINADKLRVTGNKAEDKKYYR 76
Query: 205 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 372
H R P++ L K V+GM+P K G +++L+ Y G P
Sbjct: 77 HSGYPGGIYETTFKKMHERFPTRPLEKAVKGMLP-KGPLGYAMIKKLKIYAGDTHP 131
>UniRef50_Q9SYL9 Cluster: 50S ribosomal protein L13, chloroplast
precursor; n=47; cellular organisms|Rep: 50S ribosomal
protein L13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 241
Score = 35.1 bits (77), Expect = 1.1
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIA-----KVLLE-------GNKVVVVRCEQINISGNFFKNKLKLM 204
V+D +LGRLA+ IA K L G V+VV E++ +SG KL
Sbjct: 107 VVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRR 166
Query: 205 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 378
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 167 HSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223
>UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1;
Tribolium castaneum|Rep: Gustatory receptor candidate 8
- Tribolium castaneum (Red flour beetle)
Length = 379
Score = 34.7 bits (76), Expect = 1.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 175 NFFKNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWKTVRGMI 303
N+ K ++ +SF K CN+ P+ F P K LWK ++G++
Sbjct: 5 NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49
>UniRef50_O46915 Cluster: Chloroplast 50S ribosomal protein L13;
n=4; Eukaryota|Rep: Chloroplast 50S ribosomal protein
L13 - Guillardia theta (Cryptomonas phi)
Length = 143
Score = 34.7 bits (76), Expect = 1.4
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFKNKL 195
K +ID LGRLA+ AK L+ N +V++ ++I ++GN +K
Sbjct: 15 KWFIIDATDKNLGRLASETAKTLVGKYDPLYAPNVNPKNIIVIINADKIRVTGNKKFDKF 74
Query: 196 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 375
+ R P +IL K V+G++P K G+ L+ Y G P
Sbjct: 75 YYRHSGQVGGLTIETFNELQSRLPGRILEKAVKGILP-KGPLGRELFNNLKVYAGSSHPH 133
Query: 376 D 378
+
Sbjct: 134 E 134
>UniRef50_O84127 Cluster: 50S ribosomal protein L13; n=7;
Chlamydiaceae|Rep: 50S ribosomal protein L13 - Chlamydia
trachomatis
Length = 150
Score = 34.3 bits (75), Expect = 1.8
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVL------------LEGNKVVVVRCEQINISGNFFKNKLKLM 204
V++ G LGRL++ +AK+L G+ V+V+ E++ ++G K K+
Sbjct: 24 VVNAEGKTLGRLSSEVAKILRGKHKVTFTPHVAMGDGVIVINAEKVRLTG--AKRAQKVY 81
Query: 205 SFLRKRCNVNPARGPFH---FRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 360
+ + PF R P+ ++ V+GM+P KT+ G+ ++ LR G
Sbjct: 82 HYYTGFIS-GMREVPFENMIARKPAYVIEHAVKGMLP-KTKLGRRQMKSLRVLKG 134
>UniRef50_Q7WFC3 Cluster: 50S ribosomal protein L13; n=265;
Bacteria|Rep: 50S ribosomal protein L13 - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 142
Score = 33.9 bits (74), Expect = 2.4
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFKNKLKLM 204
VID +G +LGR+A+ +A L G+ +V++ I ++GN ++K K
Sbjct: 17 VIDAKGKVLGRVASEVAHRLRGKHKPEFTPHVDTGDYIVIINAADIVVTGNKAQDK-KYF 75
Query: 205 SFLRKRCNVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 372
+ R P + + K V+GM+P K G +++L+ Y G P
Sbjct: 76 RHTTYPGGIRETNFEKMQQRFPGRAIQKAVKGMLP-KGPLGYAMIKKLKVYAGAEHP 131
>UniRef50_Q8KTT2 Cluster: 50S ribosomal protein L13; n=1; Candidatus
Tremblaya princeps|Rep: 50S ribosomal protein L13 -
Tremblaya princeps
Length = 124
Score = 33.5 bits (73), Expect = 3.2
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVL------------LEGNKVVVVRCEQINISGNFFKNKLKLM 204
V+D RG +LGRLA +A +L N V V+ CE + ISG+ K+
Sbjct: 8 VLDARGMVLGRLAVTVAGLLRGKYKASYAHNAAPHNAVTVLNCEHVRISGSKAVGKVYYR 67
Query: 205 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGK 327
R+P+ +L V GM+P R +
Sbjct: 68 HSGHPGGLRRTKLHDLMLRSPATVLRAAVHGMLPRNRLRDR 108
>UniRef50_A4S143 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 279
Score = 33.5 bits (73), Expect = 3.2
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = -3
Query: 538 LLTACPSSCLQAYEQHHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGT 359
LL C ++ E++ G+ + GT+ L + Q +D E++ +HV + EG
Sbjct: 90 LLILCVGKATKSVEEYSGMDKTYTGTIKLGEGTPSQDADEEVNEREPWEHVTDVELREGA 149
Query: 358 RHM 350
R +
Sbjct: 150 RKL 152
>UniRef50_Q54I73 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1471
Score = 32.7 bits (71), Expect = 5.6
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 85 LGRLAAVIAKVLLEGNKVVVVRCE-QINISGNFFKNKLKLMSFLRKRCNVN 234
L LA +I VL+E N R E +I +S F+N+ K +S RKR N N
Sbjct: 991 LDSLALIIGSVLIEAN--TCERSEFEIKVSSKAFENQFKYISEQRKRINDN 1039
>UniRef50_Q9RXY1 Cluster: 50S ribosomal protein L13; n=6;
Bacteria|Rep: 50S ribosomal protein L13 - Deinococcus
radiodurans
Length = 174
Score = 32.7 bits (71), Expect = 5.6
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Frame = +1
Query: 58 IVIDGRGHLLGRLAAVIAK------------VLLEGNKVVVVRCEQINISGNFFKNKL-K 198
+V+D G LGRLA +IA +++G+ VVV+ Q+ ++G +K+
Sbjct: 42 VVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYT 101
Query: 199 LMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 360
+ + AR + P +++ V GM+P K +G+ RL+ Y G
Sbjct: 102 RYTGYQGGLKTETAREALS-KHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAG 153
>UniRef50_UPI0000E4735E Cluster: PREDICTED: similar to pats1; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
pats1 - Strongylocentrotus purpuratus
Length = 1204
Score = 32.3 bits (70), Expect = 7.4
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2
Query: 305 GIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLK--KLPEMLICSQRT 144
G +P +FHR++ A++W G R G + L R ISL + + L EML C + T
Sbjct: 940 GFLPDGLFHRLMTRAVRWMGERDGEPVILFYR-QISLMVDEEHHALLEMLPCHEAT 994
>UniRef50_UPI00003C0D3F Cluster: PREDICTED: similar to CG9186-PB,
isoform B; n=1; Apis mellifera|Rep: PREDICTED: similar
to CG9186-PB, isoform B - Apis mellifera
Length = 309
Score = 32.3 bits (70), Expect = 7.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 336 KSILATLCFVW--DHASYSLP*NLRWSSKMERSTSRIHVAPLTQE*HKLEFVLKEVARDV 163
KS L T VW HA + P N + S H + +TQ HK++F+ K V DV
Sbjct: 56 KSKLPTEVPVWIISHAGHVQPPNNLAITMPSNSNWTEHYSLMTQVQHKIDFIKKYVPEDV 115
Query: 162 DLFAANHN 139
+ H+
Sbjct: 116 KIHLIGHS 123
>UniRef50_Q6YR78 Cluster: 50S ribosomal protein L13; n=2; Candidatus
Phytoplasma asteris|Rep: 50S ribosomal protein L13 -
Onion yellows phytoplasma
Length = 152
Score = 32.3 bits (70), Expect = 7.4
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Frame = +1
Query: 61 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFKNKLKLM 204
++D +G LGRLA +A +L G+ V+VV I+++G ++ K
Sbjct: 27 LVDAKGKTLGRLATKVASILKGKHKTHYTPHVDNGDYVIVVNAAYIHLTGKKWQQKTYYK 86
Query: 205 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTY 354
+ P++++ K + GM+PH T+ G ++L Y
Sbjct: 87 HSGYPGGLTKVVASEMMRKFPTRMVEKAILGMVPH-TKLGSQIGKKLFVY 135
>UniRef50_O51314 Cluster: 50S ribosomal protein L13; n=3; Borrelia
burgdorferi group|Rep: 50S ribosomal protein L13 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 146
Score = 32.3 bits (70), Expect = 7.4
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Frame = +1
Query: 52 KAIVIDGRGHLLGRLAAVIAKVLLE------------GNKVVVVRCEQINISGNFFKNKL 195
K VID +LG++A + K+L G+ V+++ ++ ++G ++ KL
Sbjct: 20 KWYVIDAADRILGKVAVDVVKILRGKHKAYYTPHQDLGDNVIIINASKVKLTGKKYQQKL 79
Query: 196 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 360
+ R P L ++GM+P K G+N R L+ + G
Sbjct: 80 YYRHSRYPGGLYSDTFRTLSERKPCAPLEIAIKGMLP-KGPLGRNLFRNLKVFSG 133
>UniRef50_A3CKB0 Cluster: Putative uncharacterized protein; n=1;
Streptococcus sanguinis SK36|Rep: Putative
uncharacterized protein - Streptococcus sanguinis
(strain SK36)
Length = 344
Score = 31.9 bits (69), Expect = 9.8
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -1
Query: 276 NLRWS--SKMERSTSRIHVAPLTQE*HKLEFVLKEVARDVDLFAANHNNFVPFEKDLGDD 103
NL W +K + +++ V PL HK++ +++ V D + A N N KD+ D
Sbjct: 116 NLEWMLYAKKQGEDTKMEVIPLAN--HKIDVIVRNVPEDFEAIALNITNKTMANKDVDVD 173
Query: 102 CRQTAQQMTTAIDHYGLN 49
+ +T++ Y N
Sbjct: 174 IEE-YNDITSSETRYSSN 190
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,633,957
Number of Sequences: 1657284
Number of extensions: 10576425
Number of successful extensions: 26007
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 25392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25964
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -