Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_O01
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   211   3e-55
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   211   3e-55
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    28   5.0  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   6.6  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    27   8.7  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    27   8.7  
AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    27   8.7  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  211 bits (515), Expect = 3e-55
 Identities = 96/160 (60%), Positives = 122/160 (76%)
 Frame = +1

Query: 43  LAIKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKR 222
           L+ +AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF ++KLK MSFLRKR
Sbjct: 3   LSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKR 62

Query: 223 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 402
           CN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +         
Sbjct: 63  CNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHA 121

Query: 403 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
                F L+P R +C VGRLSHE+GW+++DVV KLE KRK
Sbjct: 122 PSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRK 161


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  211 bits (515), Expect = 3e-55
 Identities = 96/160 (60%), Positives = 122/160 (76%)
 Frame = +1

Query: 43  LAIKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFKNKLKLMSFLRKR 222
           L+ +AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF ++KLK MSFLRKR
Sbjct: 3   LSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKR 62

Query: 223 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 402
           CN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +         
Sbjct: 63  CNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHA 121

Query: 403 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 522
                F L+P R +C VGRLSHE+GW+++DVV KLE KRK
Sbjct: 122 PSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRK 161


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 526 CPSSCLQAYEQHHGISIQFHGTVCLHDSNY 437
           C S  L  +E HHGI +   G + L D++Y
Sbjct: 329 CSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 157 QINISGNFFKNKLKLM-SFLRKRCNVNPARGPFHF 258
           Q + S NFFKNK K++ +FL+K+      +  FHF
Sbjct: 93  QCDKSNNFFKNKNKIIYAFLQKKSFQKHRQLMFHF 127


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 504 LTNNITVFPSNFMGQSAYMTVITARFQTE 418
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 353 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 177
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 176 LPEMLI 159
           LPE  +
Sbjct: 210 LPEWTV 215


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 353 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 177
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 176 LPEMLI 159
           LPE  +
Sbjct: 210 LPEWTV 215


>AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical
           protein Y56A3A.5 protein.
          Length = 762

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 267 WSSKMERSTSRIHVAPLTQE*HKLEFVLKEVARDVDLFAANHNNFVPFEKDLG 109
           +S  +E++ +R   +P+    +++ FVL E+  DVD +  N   FV   K +G
Sbjct: 13  YSELLEKALAR-DWSPVDFIKNEILFVLDELKMDVDKYKKNREEFVKIGKCVG 64


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 353 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 177
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 176 LPEMLI 159
           LPE  +
Sbjct: 210 LPEWTV 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,442,529
Number of Sequences: 27780
Number of extensions: 254269
Number of successful extensions: 656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)