Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N18
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           28   1.0  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.4  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    26   5.5  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   5.5  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   7.2  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   7.2  
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi...    25   9.5  

>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 170 NAGFAAAVSTVTSKKESSIEKEMPSRKRSTSSPVNVPPAKKPVSR 304
           N G   +V TVTS    S +K  P+     S+ ++   AKKP S+
Sbjct: 209 NRGVVLSVDTVTSPISQSPKKLTPTTSPINSTSLSFVDAKKPGSK 253


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 591 IKYSGDNLGCFNFKVIYVFDCNKLFFNLNAYICTISILLSLY 466
           IKY  +     + KVIY   CNKL F  NA +   S+L +L+
Sbjct: 115 IKYELEKKEEASLKVIYCLFCNKLEF-FNADMNAASVLNNLF 155


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 287 KKPVSRREELLKQLKAVEDAIARKR 361
           K+P SRR+EL+K+    E    RKR
Sbjct: 175 KEPDSRRDELVKRYNGRERVYLRKR 199


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 227 EKEMPSRKRSTSSPVNVPPAKKPVSRREE 313
           ++  P R   + SPV+  P K PV    E
Sbjct: 160 DRRSPKRNHRSPSPVSFAPQKSPVENETE 188


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 218 SSIEKEMPSRKRSTSSPVNVPPAKKPVSRREE 313
           SS + +   +K+   SP+++P +KKP     E
Sbjct: 3   SSKKSKTHKKKKEVKSPIDLPNSKKPTRALSE 34


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 188 AVSTVTSKKESSIEKEMPSRKRSTSSPVNVP 280
           ++S   SKK S++ + +    RS S+P+++P
Sbjct: 137 SLSRRNSKKSSTLSRSISLHLRSESAPISLP 167


>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
           Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 84  PHRAVREHAGPGTPGYS 134
           P  AV  H+GP  P YS
Sbjct: 81  PEHAVSPHSGPAPPSYS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,859
Number of Sequences: 5004
Number of extensions: 40593
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)