Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_N18
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0086 + 22280463-22280548,22281289-22281394,22281923-222820... 31 0.80
07_03_1215 + 24937016-24937229,24937418-24937623,24938135-249382... 30 1.4
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 30 1.9
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 29 2.4
07_03_1071 + 23753883-23754752 29 2.4
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649... 29 2.4
02_01_0002 - 9542-9762,11085-11196,11328-12575 28 5.6
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 28 7.5
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 28 7.5
07_01_0862 - 7172083-7172931 27 9.9
>05_05_0086 +
22280463-22280548,22281289-22281394,22281923-22282008,
22290700-22290925
Length = 167
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 42 RRHQVNLKLIPVRRPHRAV--REHAGPGTPGYSMRPR 146
R + L P RRPHRA R AG G P + RPR
Sbjct: 103 RGFDADAALPPGRRPHRAAAGRAEAGRGGPAQAQRPR 139
>07_03_1215 +
24937016-24937229,24937418-24937623,24938135-24938207,
24938619-24938812
Length = 228
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +2
Query: 182 AAAVSTVTSKKESS-IEKEMPSRKRSTSSPV---NVPPAKK-PVSRREELLKQLKAVEDA 346
AAA +TV+ KK+++ +KE + + + P PP K P +EE++ LKA +A
Sbjct: 66 AAAATTVSEKKDAADAKKEATAEAKPAAKPAAKPKKPPVKPLPEMMQEEIIPPLKAALEA 125
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 170 NAGFAAAVSTVTSKKESSIEKEMPSRKRSTSSPVNVP-PAKKPVSRREELLKQLKAVEDA 346
N+ A + + K E S + SR RSTSS NVP P +P + E +++ +
Sbjct: 219 NSSGTAQIQRIPKKSEPS--PSVVSRSRSTSSVTNVPKPTTRPATVTSERTHKVEGLPLE 276
Query: 347 IARKRSKI 370
+RS +
Sbjct: 277 SKTERSSV 284
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 170 NAGFAAAVSTVTSKKESSIEKEMPSRKRSTSSPVNVP-PAKKPVSRR 307
N+ A + + K E S + SR RSTSS NVP P +P + R
Sbjct: 193 NSSGIAQIQRIPKKSEPS--PSVVSRSRSTSSVTNVPKPTTRPATAR 237
>07_03_1071 + 23753883-23754752
Length = 289
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 230 KEMPSRKRSTSSPVNVPPAKKPVSRREELLKQLKAVEDAIA 352
K+ + +TSS + PP +P S RE+++K + A A
Sbjct: 123 KQQAAATSATSSQSSTPPTSEPASPREDVIKPARPAAAAAA 163
>05_04_0413 -
21063868-21064344,21064416-21064482,21064865-21064948,
21065028-21065158,21065504-21065560,21065818-21065866,
21067357-21067442,21067715-21067792,21067952-21068074,
21068705-21068794,21068796-21068849,21068923-21069020,
21069093-21069160,21069688-21069777,21069870-21070117
Length = 599
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 212 KESSIEKEMPSRKRSTSSPVNVPPAKKPVSRREELLKQLKAVEDAIARKRSKI*YLL 382
++ I E+ + S NV PA+ PV +E+ + + ++DAIA + I L+
Sbjct: 500 QQDGIATEIQNECDGNRSQENVTPAQGPVGSQEQPKQNIDKIQDAIAPVKISINQLI 556
>02_01_0002 - 9542-9762,11085-11196,11328-12575
Length = 526
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 18 RLLPDQTLRRHQVNLKLIPVRRPHRAVREHAGPGTP 125
R+L TLRR Q++ + I +R + R AG G P
Sbjct: 413 RILQGATLRRGQLSQRSIKKKRSFKRQRSQAGRGKP 448
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 197 TVTSKKESSIEKEMPSRKRSTSSPVNVPPAKKPVSR 304
TV KK + KE S S S + PAKKPV+R
Sbjct: 94 TVQPKKAAQPAKEESSDDSSDDSSSDDEPAKKPVAR 129
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +2
Query: 200 VTSKKESSIEKEMPSRKRSTSSPVNVPPAKKPVSRREELLKQLKAVEDAIARKRSKI*YL 379
+ K ++ PSR +ST+ P K +SR+ + K V+ +R K L
Sbjct: 300 INQKNRKCRSQDPPSRDKSTNLQATPPGRKVKISRQHASSSKQKQVQSRNNSRRQK---L 356
Query: 380 LNEYRVYGIKLARCLPA 430
+ G K R LP+
Sbjct: 357 EGDKSEVGEKRKRALPS 373
>07_01_0862 - 7172083-7172931
Length = 282
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 197 TVTSKKESSIEKEMPSRKRSTSSPVNVPPAKKPV 298
T KK +P RK++ P+ +PP KKP+
Sbjct: 137 TAEEKKLLLFPPPLPPRKKAMLFPLPLPPRKKPL 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,789
Number of Sequences: 37544
Number of extensions: 253817
Number of successful extensions: 738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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