Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N18
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    28   0.091
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   0.48 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   0.48 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.48 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.9  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 558 NFKVIYVFDCNKLFFNLNAYICTISILLSLYH 463
           N+K  Y  +C KL++N+N YI  I I + +Y+
Sbjct: 95  NYKYNYNNNCKKLYYNIN-YIEQIPIPVPVYY 125


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 558 NFKVIYVFDCNKLFFNLNAYICTISILLSLY 466
           N+K +Y  +  KL++N+N YI  I I + +Y
Sbjct: 95  NYKKLYCNNYKKLYYNIN-YIEQIPIPVPIY 124


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 558 NFKVIYVFDCNKLFFNLNAYICTISILLSLY 466
           N+K +Y  +  KL++N+N YI  I I + +Y
Sbjct: 95  NYKKLYCNNYKKLYYNIN-YIEQIPIPVPIY 124


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 558 NFKVIYVFDCNKLFFNLNAYICTISILLSLY 466
           N+K +Y  +  KL++N+N YI  I I + +Y
Sbjct: 95  NYKKLYCNNYRKLYYNIN-YIEQIPIPVPIY 124


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 585 YSGDNLGCFNFKVIYVFDCNKLFFNL 508
           Y+ +N    N+   Y  +C KL++N+
Sbjct: 333 YNNNNYNNNNYNNNYNNNCKKLYYNI 358


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 86  WTTNGNQFQIHLMTTKSLI 30
           WT NG+Q  + L   K+ +
Sbjct: 172 WTFNGDQVSLALYNNKNFV 190


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 558 NFKVIYVFDCNKLFFNLNAYICTISILLSLYHVGL 454
           +FK+    DCNK F +L   +  +  + +  H  L
Sbjct: 524 DFKIEVTEDCNKSFNDLLTQVAELDQIYADTHAKL 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,654
Number of Sequences: 438
Number of extensions: 3014
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)