Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N14
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.3  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   3.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   5.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.2  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   7.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.5  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   9.5  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 467  TIVINFSSFPQVIPEALKAISSSG---LNLNPQQDGTTLFVPVPKVTKEHREALAKNAKV 637
            T+  + S   Q +P+    I S     L+L+  + G     P+ +++ EH   LAKN  +
Sbjct: 1065 TLFPSGSEVVQFVPDRTYNIDSEYVVYLSLHESRSGRVYMSPLTEISPEHLARLAKNTTL 1124

Query: 638  L 640
            L
Sbjct: 1125 L 1125


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 452  RKNPKTIVI---NFSSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKE 604
            R NP TI +   + + FP ++    K I  S  N   Q+  T +F P  KV K+
Sbjct: 1557 RPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQ 1610


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +2

Query: 269 AVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQELAQI 448
           ++ S + P +++K   S   + ++      +S +S T S   +P   +GK       +  
Sbjct: 558 SITSGVPPSNRLKKHVSTPEKIVEERSIDEVS-QSNTPSSKQLPQSVDGKTVTANANSTT 616

Query: 449 VRKNPKTIV-------INFSSFPQVIPEALKAISSSGLNLNPQ 556
           V K P + V       +  ++    IP+ +K I S   NL+PQ
Sbjct: 617 VAKQPTSNVALTRPKPVRTATSQSKIPKPVKHIPSDSNNLDPQ 659


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 23/121 (19%), Positives = 51/121 (42%)
 Frame = +2

Query: 254 VEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQ 433
           +E+N   LS +I   +      A ++++K+  +K  + +    ++     K  G    + 
Sbjct: 596 LEMNGHSLSTVISGKESISSFGAKVDDLKST-SKESARQFGKSALTERLQKLAGNSSNVS 654

Query: 434 ELAQIVRKNPKTIVINFSSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHRE 613
              Q    N  +++   SSFP ++   L   ++   + NP    +T+  P+P    E  +
Sbjct: 655 SSLQTSSSNKSSLLTKKSSFPALLKGFLALPATVTTSANPLGFKSTIQRPIPIKNNEDSD 714

Query: 614 A 616
           +
Sbjct: 715 S 715


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/63 (22%), Positives = 25/63 (39%)
 Frame = +2

Query: 320  AAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQELAQIVRKNPKTIVINFSSFPQ 499
            AA       F ++       G + T+P KF     E+ E   +     KT+++ F +   
Sbjct: 1012 AAYTQFPGVFEEYRQFVDRYGDLTTVPTKFFLSRPEMNEEMHVEIDQGKTLIVKFVALGP 1071

Query: 500  VIP 508
            + P
Sbjct: 1072 LNP 1074


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 371 STTGSIDTIPVKFEGKEYELQELAQIVRKNPKTIVINFSSFPQVIPEAL 517
           ST   +  +P   +     L EL+++V    + + I   +FP V+P+ L
Sbjct: 209 STFSLLKLVPSLQDNTNASLVELSRVVEAAIQKLSIKPLAFPNVLPQVL 257


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 24/115 (20%), Positives = 45/115 (39%)
 Frame = +2

Query: 293 VDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQELAQIVRKNPKTI 472
           + ++KD    ++      FA+ +S+  ++ S  +IP K   +       +   R      
Sbjct: 307 IQQLKDSYEQSLYEEYPQFAEPISVSQSSDSSSSIPKKSNDEAGGSPSKSSPTRPGFNDY 366

Query: 473 VINFSSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKV 637
           V   +S   V+P     I S  L+ +P  D     +P P  T   R + +  + V
Sbjct: 367 VNRPTS---VMPSLSNMIVSPDLDSSPSTDWNQYVIP-PLATPSSRNSKSTQSAV 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,566
Number of Sequences: 5004
Number of extensions: 43692
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)