Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N14
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               24   1.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 254 VEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLS 364
           + I++ +LSE I  +K  D+C   + N    F+K LS
Sbjct: 108 ISIDVKMLSECINANKSTDKCENGL-NFIICFSKLLS 143


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 329 ENMKADFAKHLSIRSTTGSIDTIP 400
           +N++ D A+H+   S T S +T+P
Sbjct: 417 KNIREDDARHIPHASVTDSENTVP 440


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 97  SLQYSSTHSTNYINNN 50
           SL  S  +S NY NNN
Sbjct: 306 SLSNSCNYSNNYYNNN 321


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/53 (20%), Positives = 23/53 (43%)
 Frame = +2

Query: 296 DKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQELAQIVR 454
           DK+KD      E +  D   H  +  + G   +    +EG  +++ +  ++ R
Sbjct: 670 DKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSR 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,073
Number of Sequences: 438
Number of extensions: 2825
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)