Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_N12
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    28   1.4  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   2.4  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.5  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   9.5  

>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 317 CHENQRSGSLQSYIIRLLFKSY---NHNFVKKPSTKH 216
           C E   + S +S+ I+L  K Y   +H F+  PS KH
Sbjct: 23  CFETNAATSPRSFQIQLRIKGYAVYHHGFLSSPSHKH 59


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 636 QWTHYYVAHLMFGGVHEIPVHVPLNFLRLYEHLRHSEILLFFSYFSPFASADIHGTFRHS 457
           +W       L+FGG   IP   P+N+      L  S I LFF+Y+     AD    +  +
Sbjct: 668 KWWGQLNGPLIFGGTGYIPPATPVNY------LAWSGIGLFFNYYLKKIFADWWQKYNFT 721

Query: 456 FSA 448
            SA
Sbjct: 722 LSA 724


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 453 KTNAEKCREYRQRQKEKNMKKIAKFRNVADARKVAKSST 569
           K+   K  + +QRQK+KN KK         ++K  K  T
Sbjct: 37  KSKLTKLGKQKQRQKQKNTKKDTLVNRETPSKKSQKLET 75


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 533 CRRCS*SRKKFNGTCTGISCTPPNIKC 613
           C+ C   + K NG    ISC   NI+C
Sbjct: 39  CKHCRQKKIKCNGGQPCISCKTLNIEC 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,483
Number of Sequences: 5004
Number of extensions: 46547
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)